Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2641 |
Symbol | mscL |
ID | 4023138 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 2959532 |
End bp | 2959963 |
Gene Length | 432 bp |
Protein Length | 143 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637962839 |
Product | large-conductance mechanosensitive channel |
Protein accession | YP_569771 |
Protein GI | 91977112 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1970] Large-conductance mechanosensitive channel |
TIGRFAM ID | [TIGR00220] large conductance mechanosensitive channel protein |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00276841 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCTCAAGG AGTTCCGCGA ATTCGCGATG AAGGGCAATG TCGTCGATCT TGCGGTCGGC GTCATCATCG GGGCCGCGTT CGGCGCCATC GTGACCTCGA TGGTCGGCGA TCTGATCATG CCGGTGATCG GCGCGGTCAC CGGCGGCCTC GACTTCTCGA ACTACTTCAC ACCGCTGTCG AAGGCGGTGA CGGCGAATTC GCTGGCCGAG GCGAAGAAGC AGGGCGCGGT GCTGGCGTGG GGCAGTTTCC TCACCATCAC GCTCAACTTC CTGATCGTCG CCGGCGTCTT GTTCGGCGTG ATCCGGGCGA TGAACCGGCT GAAGCGCAAC GACGAGGCCG TCGCAGCGTC GCCGCCGAAG CCGACCCGCG AGCAGGAACT TCTCACGGAG ATCCGCGATA TTCTGAAGAG CGGCATCCGC CCGCAGGTCT AG
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Protein sequence | MLKEFREFAM KGNVVDLAVG VIIGAAFGAI VTSMVGDLIM PVIGAVTGGL DFSNYFTPLS KAVTANSLAE AKKQGAVLAW GSFLTITLNF LIVAGVLFGV IRAMNRLKRN DEAVAASPPK PTREQELLTE IRDILKSGIR PQV
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