Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2633 |
Symbol | rimO |
ID | 4023130 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 2951737 |
End bp | 2953062 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637962831 |
Product | ribosomal protein S12 methylthiotransferase |
Protein accession | YP_569763 |
Protein GI | 91977104 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0621] 2-methylthioadenine synthetase |
TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family [TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.359809 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000423005 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCAGCAGG CCGCCGCGCC AAAGATCAGT TTTGTCTCGC TGGGATGCCC CAAGGCGCTG GTGGATTCCG AGCGGATCAT CACCCGGCTG CGCGCCGAGG GATACGAGCT CGCGCGCCAG CACGACGGCG CCGATCTGGT GATCGTCAAT ACCTGCGGAT TCCTCGACAG CGCCAAGCAG GAATCGCTCG CCGCGATCGG CGAAGCGATG GCCGCCAACG GCAAGGTGAT CGTCACCGGC TGCATGGGCG CCGAGCCCGA GCAGATCGAA GCCGCCTATC CGGGCGTGCT GTCGATCACT GGCCCGCAGC AATATGAGAG CGTGCTGGAA GCGGTGCATC GGGCCAAGCC GGCGCTGCAC AATCCGCATC TCGATCTGGT GCCCGAGCAA GGCATCCGGC TGACGCCGCG GCACTACGCC TATCTGAAGA TTTCCGAGGG CTGCAACAAC CGCTGCAGCT TCTGCATCAT TCCGAAGCTG CGTGGTGATC TCGTGTCACG CTCCGCTGAC GACGTGTTGC GCGAGGCCGA GAAGCTGGTC GCCGCCGGCG TCAAAGAACT ACTGGTGATC TCGCAGGACA CTTCGGCCTA CGGCGTCGAT CTGAAATACG CCGAAAGCCC GTGGAAAGAT CGCACGGTCC GCGCCAAATT CATCGATCTT GCGCGCGAAC TCGGCGAACT CGGCGCATGG GTGCGTCTGC ACTACGTCTA CCCCTACCCG CATGTCGACG AAGTGATCGG GCTGATGGCC GAGGGCAAGG TGCTGCCCTA TCTCGACATC CCGTTCCAGC ACGCGAGCCC CGATGTGCTC AAGCTGATGA AGCGCCCGGC GGCGCAGGAC AAGACGCTCG ACCGCATCAA GCGCTGGCGC GCGGACTGCC CGGATCTGGC GCTACGCTCG ACCTTCATCG TCGGCTTCCC CGGCGAGACC GAACGCGATT TTGAGTTCCT GCTAGACTGG CTCGACGAGG CCGAGATCGA CCGCCTCGGC GCGTTCAAAT ACGAACCGGT CGCCGGCGCG CCGTCGAATG CCCTGCCCGA CCAGATCAGC GCTGAGGTCA AGCAGGAGCG CTGGAATCGG CTGATGGCGC GGCAGCAGGT CATCTCGGCG CGGCGGCTGA AGCGCAAGGT CGGTACCCGC CAGCAGATCA TCATCGACGA AGTCGGGCCG ACCGTCGCCA AGGGCCGCTC CAAGGCCGAC GCGCCGGAGA TCGACGGCAG CGTCTATCTC TCGAGCCGAC GCCCGCTCCG CGTCGGCGAG ATCGTCACCG CCAAGATCGA CCGCGCCGAC GCGTATGATC TGCATGGGAC GGTCGCGGGG TTCTGA
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Protein sequence | MQQAAAPKIS FVSLGCPKAL VDSERIITRL RAEGYELARQ HDGADLVIVN TCGFLDSAKQ ESLAAIGEAM AANGKVIVTG CMGAEPEQIE AAYPGVLSIT GPQQYESVLE AVHRAKPALH NPHLDLVPEQ GIRLTPRHYA YLKISEGCNN RCSFCIIPKL RGDLVSRSAD DVLREAEKLV AAGVKELLVI SQDTSAYGVD LKYAESPWKD RTVRAKFIDL ARELGELGAW VRLHYVYPYP HVDEVIGLMA EGKVLPYLDI PFQHASPDVL KLMKRPAAQD KTLDRIKRWR ADCPDLALRS TFIVGFPGET ERDFEFLLDW LDEAEIDRLG AFKYEPVAGA PSNALPDQIS AEVKQERWNR LMARQQVISA RRLKRKVGTR QQIIIDEVGP TVAKGRSKAD APEIDGSVYL SSRRPLRVGE IVTAKIDRAD AYDLHGTVAG F
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