| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2526 |
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| Symbol | |
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| ID | 4023017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 2826482 |
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| End bp | 2828836 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637962719 |
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| Product | tetratricopeptide TPR_2 |
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| Protein accession | YP_569657 |
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| Protein GI | 91976998 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.82201 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGGCC ATTCACGATC GCGATCGATC GGGCTGATCG CCGGACTCGC CCTGGCCATC
GTGCTGGCCG GAATTTCCGA ACGGCTGGTC GCTGAGCCCG TAACCCGACC CGCGCCACCG
AACTTCGTCG GCAGCGAAAG CTGCGCCGGT TGCCACCCGG GCCAGGCGGC GCTTTGGCGC
AAATCCCAGC ACAGCCACGC CATGGCGCAT GCGACCGAGA CGACAGTGCT CGGTGATTTC
AACGATGCGC GTTTCGAGCA TTTCGGCGTG CCATCGCGGT TCTTTCGTCG GGATGGCAAG
TTCATGGTGG AAACGGACGG GCCGGACGGC AAGCTGACGA CGTTCGAGGC GAAGTACACT
TTTGGCATCG ATCCGCTGCA GCAATATCTG ATCGAATTCC CCGACGGTCG CCTGCAGGCG
CTGACGATTG CTTGGGACGC ACGGCCGAAG GACAAAGGCG GGCAGCGCTG GTTTCATCTC
TATCCGGACG AACGCATCGG GCACGACGAC GTGCTGCATT GGACCAGGCT GAACCAGAAC
TGGAATTTCA TGTGCGCCGA GTGCCATTCT ACCGGCATTC GGAAGAACTA CGATGCGCAG
ACTGATCGCT TCGCGACGAC ATGGGCTGAG ATCAGCGTCG GCTGCGAAGC CTGTCATGGC
CAGGGCTCAA ATCACGTCGC ATGGGCGCAC GCCCGGCAGA GCGGGTGGCC GTCGGAAAAG
TCGCTCGACG ATACGATGGG CCTGCTGGTG CGCTATGCCG AGCGGAGCAA CATCGGCTGG
ACGCTCGATC CGAACACCGG AAACTCCGCG CGGAGCGCGC CGCCCGCGAT GCTCCGCACC
GAAGTCGAGG CTTGTGGACG ATGTCACGCT CGGCGCGGCC AGTTGTTTGA GGATTGGGTG
CCGGGACACT GGCTGTCCGA CAGCCACGTC GTCTCGCCTC TCGGCCGTGG GCTCTATCAC
GCCGATGGGC AGATGCGCGA CGAGGTTTAC AACTACGGCT CGTTCAAGCA GAGCAAGATG
TATGCTGCCG GCATCACGTG CAGCGACTGC CACGATCCGC ACAGCGGCAA GCCGCGGCAC
AGTGGAGACA ATCTCTGCCT GCAATGTCAT TCAGCGGACA AATTCGCCAT CGCGTCGCAC
CATCGCCACG CGGCGGTGGA TCCGCCGCTC GGCTGCGCGT CTTGCCACAT GCCGGTCCGG
ACCTATATGG GCGTCGATCG GCGGCATGAT CACGGTTTCC GCGTCCCGCG TCCCGATCTG
TCCGCGCAGT TGAATACCCC GAATGCCTGC AACGATTGCC ACGCCGATCG GACGCCGCAA
TGGGCCGCCG CGGCAATCGA TAGCTGGCAC GGACCAAGCC GCAAGGGGTT CCAGACCTTC
GCGCCGGCAT TGGCCGCGAG CTGGGCAGGC CGCGCCGATT CATCCAAATT GCTGGCTGCG
GTGGCGGCCG ATCACGCCAC CCCCGACATC GTCCGCGCCA CGGTTCTGAC CGAGCTCAAT
GCGTACGTAT CCGCGGAAAC GATGGAGCAG GCGAAGGCCG GTTTGTCGAA CCCCGATCCG
ATGGTGCGGA TCGGAGCGCT CGATCTGCTC GAAGGCGGGC CGCCGCTGCA ATTGTGGGCG
ATCGCTTCGC CGCTGCTGTC TGATCCCATT CGCGGCGTTC GCATTCGAGC GGCCTCGCTG
CTCGCTTTGG TGCCCGCTGC GCAGCAGCCT GTTGCTGACC GCCCGCGGTT CCAGAGCGCC
GCCGAGGAGT TCGTCGCTGC GCAGCGTCTC AACGCGGATC GGCCCGAGGC GCGATCGGCG
CTGGGACGGT TCCTGCTGCA GCGCGGGCAG GTGACTGAGG CCGAGACGGA ATACAAAGCG
GCCCTGCGCT TCAGCCCAGC CTATGCTCCT GCCGCGGTCA ATCTGGCCGA TCTGTACCGC
CAGGGCGGCC GCGAGCCCGA AGGTGAAAGT GTGTTGCGCA CAGCCCTGAT AGCCGCACCG
CGGGACGCCG AATTGCACCA TGTTCTCGGG CTGACCTTGG TGCGGTTGAA ACGGTATGAC
GAAGCGATTG CCGAATTGCG CCAAGCTACC GAGCTTGAGC CCGACCGGGC ACGGTTTGCG
TATGTCTACG CCGTCGCTCT ACACTCCGCG GGCCGCATGG CCGACGCCAT CTCCATTCTG
AAACAGATCG CCGCCCGGCA TCCGCACGAC CGCGACACGA TGATGGCGGT CATCGCCTTC
AGCCGAGACG CGGGAGACAT CGACACAGCG CTCGACTACG CCGAGCGTTT GGCCGCCGCC
TTTTCGCAGG ACGCTGGCCT CGATCGCCTC GTTCGGGAGC TTCGACAACG GCTCCCAAAT
CCCACCGCAC GATGA
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| Protein sequence | MSGHSRSRSI GLIAGLALAI VLAGISERLV AEPVTRPAPP NFVGSESCAG CHPGQAALWR
KSQHSHAMAH ATETTVLGDF NDARFEHFGV PSRFFRRDGK FMVETDGPDG KLTTFEAKYT
FGIDPLQQYL IEFPDGRLQA LTIAWDARPK DKGGQRWFHL YPDERIGHDD VLHWTRLNQN
WNFMCAECHS TGIRKNYDAQ TDRFATTWAE ISVGCEACHG QGSNHVAWAH ARQSGWPSEK
SLDDTMGLLV RYAERSNIGW TLDPNTGNSA RSAPPAMLRT EVEACGRCHA RRGQLFEDWV
PGHWLSDSHV VSPLGRGLYH ADGQMRDEVY NYGSFKQSKM YAAGITCSDC HDPHSGKPRH
SGDNLCLQCH SADKFAIASH HRHAAVDPPL GCASCHMPVR TYMGVDRRHD HGFRVPRPDL
SAQLNTPNAC NDCHADRTPQ WAAAAIDSWH GPSRKGFQTF APALAASWAG RADSSKLLAA
VAADHATPDI VRATVLTELN AYVSAETMEQ AKAGLSNPDP MVRIGALDLL EGGPPLQLWA
IASPLLSDPI RGVRIRAASL LALVPAAQQP VADRPRFQSA AEEFVAAQRL NADRPEARSA
LGRFLLQRGQ VTEAETEYKA ALRFSPAYAP AAVNLADLYR QGGREPEGES VLRTALIAAP
RDAELHHVLG LTLVRLKRYD EAIAELRQAT ELEPDRARFA YVYAVALHSA GRMADAISIL
KQIAARHPHD RDTMMAVIAF SRDAGDIDTA LDYAERLAAA FSQDAGLDRL VRELRQRLPN
PTAR
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