Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2484 |
Symbol | |
ID | 4022975 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 2775572 |
End bp | 2777626 |
Gene Length | 2055 bp |
Protein Length | 684 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637962677 |
Product | DNA topoisomerase IV subunit B |
Protein accession | YP_569615 |
Protein GI | 91976956 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.185915 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCCAAGG CATTGAAGCC GAGCAGCAAA TCGAAATCCG CGGGTGACCT GTTCGGGGCC GCGCCGAAAT CCGCCGCGCC GCGCCCGGCC GCCAAGCCGA CCGGCGGTGC CGAGGCCGGC TACACCGCCG CCGACATCGA GGTGCTGGAA GGGCTGGAGC CGGTTCGCCG CCGCCCCGGC ATGTATATCG GCGGCACCGA CGAAAAGGCG CTGCACCACC TGTTCGCCGA AGTGATCGAC AACTCGATGG ACGAGGCGCT GGCCGGCCAC GCCACCTTCA TCGAGGTCGA ATTGACCACC GACGGCTTCC TCACTGTCTC TGATAACGGC CGCGGCATTC CCGTTGATCC GCATCCGAAA TTTCCGAAAA AATCCGCGCT CGAAGTGATC ATGTGCACGC TGCATGCCGG CGGCAAATTC GACAGCAAGG TGTACGAGAC CTCGGGCGGT CTGCACGGCG TCGGCGTCAG CGTCGTCAAT GCGTTATCGT CGCTGCTTGA AGTGGAGGTC GCGCGCGGCC AGCAGCTCTA CCGCATGGTG TTCGCGCGCG GCATCCCGCA GGGCAAGCTC GAGAGCCTCG GCAAGATCAA CAACCGCCGC GGCACCCGCG TCCGCTTCAA GCCCGACGCC GACATTTTCG GCGCCAAGGC GGCGTTCAAG CCGCAGCGTC TGTTCAAGAT GGCGCGCTCG AAGGCCTATC TGTTCGGCGG CGTCGAGATC CGCTGGAAGT GCGATCCCGA ATTGCTGAAG GGCCTTGAGG ATGTCCCCGC CGAGGACACG TTCCACTTCC CCGGCGGCCT CAAGGACTAT CTCGGCGCGG CGATCCACGC CGACACGCTG GTGCATCCCG ACATCTTCTC CGGCAAGTCC GGCCGCAACG GCGCCCATGG CGCGTGCGAA TGGGCGGTGG CCTGGACCGC GGACGCCGAC GGCTTCCTGT CGTCCTATTG CAACACCGTG CCGACGCCCG ACGGCGGCAC CCACGAATCC GGCATGCGCT CCGCCCTGCT CCGCGGCCTG AAGGACCACG CCGAGCGCGT CGGCCAGGGC AAGCGCGCCT CGTCGATCAC CTCCGAAGAC GTCATGGTCG GCGCCGCGGT GATGCTCTCG GTGTTCGTGC GCGAGCCGGA GTTCCAGGGC CAGACCAAGG ACCGCCTCGC CACCGCCGAA GCCCAGCGCA TCGTCGAACA GGCGATCAAG GACCCGTTCG ACCACTGGCT GTCCGGCAAT CCGGTGCAGG CCAACAAGCT GCTCGACTTC GTCGTCGAGC GGGCCGAGGA GCGGCTGCGC CGCCGCCAGG AAAAGGAAAT CTCGCGCAAG ACCGCGGTCA AGAAGCTGCG TCTGCCCGGC AAGCTCGCCG ACTGCACCAA TACCGCCGCC GAAGGCTCCG AGCTGTTCAT CGTCGAGGGC GACTCGGCCG GCGGCAGCGC CAAGCAGGCG CGCGACCGCA AGACCCAGGC CGTGCTACCG TTGCGCGGAA AGATCCTCAA CGTCGCCTCG GCGACCAAGG ACAAGGTGGT GGCGAACGCC CAGCTCTCCG ACCTGATGCA GGCGATCGGC TGCGGCACCG GCGTGAACTA CCGCGAGGAA GATTTGCGCT ACGCGCGCAT CATCATCATG ACCGACGCCG ACGTCGACGG CGCGCATATC GCCTCATTGC TGATCACGTT CTTCTACCGG CAGATGCCGA AGCTGATCGA CGAGGGCCAC CTCTATCTCG CGGTGCCGCC GCTGTATCGG CTGACCCACG GCGCCAAGAC CGTCTACGCC CGCGACGACG CCCATAAGGC AGAGTTGCTG AAGAAGGAAT TCAACGCCAA CGCCAAGGTC GATGTCGGCC GCTTCAAGGG CCTCGGCGAG ATGATGCCGG CGCAGCTCAA GGAAACCACC ATGGACCCGG CGAAGCGCAC GCTTCTCCGC GTGGTCCTGC TGCCCGACGA CCGCGAAGGC ACCGCGGATT CCGTCGAGCG CCTGATGGGC ACCAAAGCCG AAGCAAGGTT CGCCTTCATC AGCGACAAGG CCGAGTTCGC GAGCGAGGAT CTGCTGGACG TGTGA
|
Protein sequence | MAKALKPSSK SKSAGDLFGA APKSAAPRPA AKPTGGAEAG YTAADIEVLE GLEPVRRRPG MYIGGTDEKA LHHLFAEVID NSMDEALAGH ATFIEVELTT DGFLTVSDNG RGIPVDPHPK FPKKSALEVI MCTLHAGGKF DSKVYETSGG LHGVGVSVVN ALSSLLEVEV ARGQQLYRMV FARGIPQGKL ESLGKINNRR GTRVRFKPDA DIFGAKAAFK PQRLFKMARS KAYLFGGVEI RWKCDPELLK GLEDVPAEDT FHFPGGLKDY LGAAIHADTL VHPDIFSGKS GRNGAHGACE WAVAWTADAD GFLSSYCNTV PTPDGGTHES GMRSALLRGL KDHAERVGQG KRASSITSED VMVGAAVMLS VFVREPEFQG QTKDRLATAE AQRIVEQAIK DPFDHWLSGN PVQANKLLDF VVERAEERLR RRQEKEISRK TAVKKLRLPG KLADCTNTAA EGSELFIVEG DSAGGSAKQA RDRKTQAVLP LRGKILNVAS ATKDKVVANA QLSDLMQAIG CGTGVNYREE DLRYARIIIM TDADVDGAHI ASLLITFFYR QMPKLIDEGH LYLAVPPLYR LTHGAKTVYA RDDAHKAELL KKEFNANAKV DVGRFKGLGE MMPAQLKETT MDPAKRTLLR VVLLPDDREG TADSVERLMG TKAEARFAFI SDKAEFASED LLDV
|
| |