| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2311 |
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| Symbol | |
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| ID | 4022798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 2581477 |
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| End bp | 2582718 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637962504 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_569444 |
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| Protein GI | 91976785 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.592416 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAGGA CGTCCCGGAT CTTTCTTTTC GCTTTAGCGG CAGCGGCCGG TGGCGCATTG
CTCGTCTATC TCAATGGTGT GCCTTCCATT GTCAGCAGGG TGCTGACCTC GGGTGAAACG
ATCAAGATCG CCCCGAAGCC CTCGCCACCG CCCCAGGTGC CTGTCGGTCA GGTCGTCACG
CGGGTGGCCG CACGATCGTC GGAGTTCACT GGCGTCATCG CCGCCGTCAA AACGGTCGAG
CTACGGCCAC GTATCGGCGG CACGCTTGAA TCCGTCACGG TGCCGGAAGG CGGTCTCGTT
GAACGAGGCC AGTTGCTGTT TCAGATCGAT CCTCGGCCGT TCGAGATCGC GCTGCAGAAT
GCGGAAGCGC GGCTGCAACG GGCCGAGGTT CTGTTCTCAC AAGGCGAAAC GGATCTCGAT
CGATCGCAGC GGTTGGTCCC GAGCGGATCC ATCTCCACGA AGACCTTTGA TGACGCCCTG
TCCAGGAAAC AGGAACGGCA AGCGCAGATG CTGGAGGCGA GAGCTGCAGT AGCCGCTGCC
GCGCTCGACC TTTCCTATTC ACGCCTGACC GCCCCGATCG CCGGACGGGT CGACAAGGTA
CTTGTAACAG AAGGAAACCT CGTCACCGGA GCCTCCGGGG CCACGGCGAC ATTGCTCACC
ACGATCGTTT CGGTCGACCC TGTCTATGTC TATTTCGATA TCGATGAAGC CACATATCTG
GGCTTTCTGG GCCAGACCCG CCCGGAGACC GTCGGACGCC AGGGCACCCC GTTCCCGGTG
GAAGTCGGGC TCGCCACCGA GAACGGCTAC CCGCATTCCG GCGCCTTGGA TTTCCTCGGA
AATCGCGTCG ATCGCGGCAC CGGGACGATC CGCGCCCGCG CAGTGCTGGC CAATCCCGAC
GGCAGGCTGA CACCTGGCCT GTTCGCACGG GTGAAACTCG CCACGAGCGC GCCCCGGGAA
ACCGTTCTCA TCGATGATCA AGCGGTCGGG ACCGATCAAG GCCGCCGCTA CGTTCTGGTG
TTGGGGGCCG GCAACAAGGT CGAGTACCGG CCGGTTGAAT TGGGGGCGAT GAACGAGGGA
CTGCGCGTCG TTGATAATGG CCTCAATCCT GGTGACACGA TCATCATCAA GGGGCTCGTC
CGACCCGGCA TGCAGGTTAC GCCGAACCGG ATCGCGATGG CGCCAGATCA GCGCTCGGTC
AACGGCGTTG CCAATAGCAG CTCGCAGGAA GCACGTCGAT GA
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| Protein sequence | MTRTSRIFLF ALAAAAGGAL LVYLNGVPSI VSRVLTSGET IKIAPKPSPP PQVPVGQVVT
RVAARSSEFT GVIAAVKTVE LRPRIGGTLE SVTVPEGGLV ERGQLLFQID PRPFEIALQN
AEARLQRAEV LFSQGETDLD RSQRLVPSGS ISTKTFDDAL SRKQERQAQM LEARAAVAAA
ALDLSYSRLT APIAGRVDKV LVTEGNLVTG ASGATATLLT TIVSVDPVYV YFDIDEATYL
GFLGQTRPET VGRQGTPFPV EVGLATENGY PHSGALDFLG NRVDRGTGTI RARAVLANPD
GRLTPGLFAR VKLATSAPRE TVLIDDQAVG TDQGRRYVLV LGAGNKVEYR PVELGAMNEG
LRVVDNGLNP GDTIIIKGLV RPGMQVTPNR IAMAPDQRSV NGVANSSSQE ARR
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