Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2142 |
Symbol | |
ID | 4022625 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 2400563 |
End bp | 2401834 |
Gene Length | 1272 bp |
Protein Length | 423 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637962336 |
Product | outer membrane efflux protein |
Protein accession | YP_569278 |
Protein GI | 91976619 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.143725 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTTCCA GGATCGCCAC GCAGCTTGCG TGGGCGGTTG CGCTCTTCGT TGGCGTCTCG CTGACCGGAG AAGCGCGCTC GCAAACTCTC ACTATGGGTA GTGCGCTTCA GCGCGCGCTC AACGCCAGTC CTCGGCTAAC TGCCGCCGAG CGGGACGTCG GCATCGCGCG TGGCCAACGA ATTCAAGCGG GTGCGTTCAT CAATCCGAAC GTTTCCTACG AACTGGACAA TTCGTTCGGT TCCGGGGCCT ACCGTGGCAC CAGGTCGGCG GAGTCTACCC TGCAAATCAG CCAGATGTTT GAGTTGTGGG GCAAACGAGA CGCGCGGATT GCGGCCGGTC AGGCCGGCCT CGACGCGGCT GCCATCGGAC GCCAAGCGGT TCGTCTTGAA GTGCTGTCAG AAACGGCAAT CGCCTTCGTT ACTGCACTCG GCCTTCAGCG GCGAATCCAG ATCCTGGATG AGCAGGTCCA AGCCATCGAC AAGATTACGC CGCTCCTAAA GCGTCGGGTA GAAGCCGGTG CATCGTCTGT CGCCGAGACT GGCAGGGCCG AGGTTGCATC CGCACTGGTC AAGGCAGACC GTGAGCGAAC GAAGTCGGCG CTTTCAAGCG CCCGGCGCGA ACTCGCGATT TTGATGGGAG ACAGCGCGCC GAAGTTCGCG GCGGTGTCCG GTCGCCTCGA TGTCACCGGG AAGCCGCCTT CGTTTCATTC GGTCATATCA GCGATCGACG CAAATCCGCA GTTGGTTCGC TGGAAGGCAG TATACGCCCA GCGCAACGCC GAACTGTTGC TGGCACGACT GCGGCCCTAT CCCGACGTGA CGGTCTCGGC CGGTATGCGC CACTACAACG AAACGGGCGA TAGCGCTGTC CGATTGTCGC TTTCGGTGCC GCTTCCGGTG TTCGACCAGA ACCAGGGCAA TATCCTATCC GCGCAAGAGA CGCTGGCGAG GACTGCCGCT GAACGCCAGG GCAACCGAAA CACGCTGATC CTCGTGGCGG GACGTGCATA CGATTCGCTG AGGGGATCGC TTCGCGAACT CGCGATCCTG CGCGAGGTCG CAATTCCGAA ATCCAAGGAC GCCGCGGAAG CGATATCCGA AGGGTACGGA CAGGGGCGAT ATACGCTACT CGAAGTGCTG GATTCTCAGG CCAGTGTCGC GCAGGCGCGA CTTCGAGAAC AGGAGGCGCA GCAGAACTTT CACGTCGCCG TCGCGACCAT CGAAGGGCTG GTCGGTAATC CATTCGCGTT GGCGCGGGAG AGCGCAAGAT GA
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Protein sequence | MLSRIATQLA WAVALFVGVS LTGEARSQTL TMGSALQRAL NASPRLTAAE RDVGIARGQR IQAGAFINPN VSYELDNSFG SGAYRGTRSA ESTLQISQMF ELWGKRDARI AAGQAGLDAA AIGRQAVRLE VLSETAIAFV TALGLQRRIQ ILDEQVQAID KITPLLKRRV EAGASSVAET GRAEVASALV KADRERTKSA LSSARRELAI LMGDSAPKFA AVSGRLDVTG KPPSFHSVIS AIDANPQLVR WKAVYAQRNA ELLLARLRPY PDVTVSAGMR HYNETGDSAV RLSLSVPLPV FDQNQGNILS AQETLARTAA ERQGNRNTLI LVAGRAYDSL RGSLRELAIL REVAIPKSKD AAEAISEGYG QGRYTLLEVL DSQASVAQAR LREQEAQQNF HVAVATIEGL VGNPFALARE SAR
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