Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2022 |
Symbol | |
ID | 4022504 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 2268201 |
End bp | 2268986 |
Gene Length | 786 bp |
Protein Length | 261 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637962215 |
Product | 5-carboxymethyl-2-hydroxymuconate delta-isomerase |
Protein accession | YP_569158 |
Protein GI | 91976499 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.241837 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.369682 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAAAT GGGTTCGCTT CCGCGCCGAC GGCGCGATCG GCTTCGGCAC CATCGCGCAT TCCGACATCG CCGTGCATGA CGGCGAGATG TTCGGCGCCA ACAAGCCGAC CGGACAGACA TTGCAACTCG GCGATGTCGA GCTGCTTGCG CCCTGCGCGC CGCGCAAGAT CATCGGGCTG TGGAACAATT TTCACGCACT GGCCGCCAAG CTCAATCAAT CGGTCCCGCC GGAGCCGTTG TACTTCCTGA AGGCGACCAC CAGCGTCGCC GCGCATGGCG CCGTCGTCGA TCGTCCGGCC TCGTATGACG GCAAGGTGGT GTATGAGGGC GAACTCGGCG TCGTGATCGG CAAAGAGTGC CGGGGCGTCT CCGAGGCCGA CGCGGCCTCG CACATCTTCG GCTACACCTG CGTCAACGAC ATCACCGCAG CCGACATCCT CAATCGCGAC CCGAGCTTCC CGCAATGGTC GCGCGCCAAG AGCTTCGACG GCTTCGGCCC GTTCGGGCCT GCGATCGTCG CCGGCCTGGA TCCCGCGACG CTGTCGATCC GCACCATTCT GAACGGCGCC GAGCGGCAGA ACTATCCGGT TGCGGACATG ATCTTCAGCC CCGCGAGGCT GGTCAGCCTG ATCTCGCGCG ACATGACGCT CGAGCCCGGC GACCTGATCT GCTGCGGCAC CTCGGTCGGC GTCGGCGTGA TGAAGGAGCC GGTCAACAGC GTCACCATCG CGATCGAAGG TATCGGCGAG TTGCACAACG AATTCCGTCA GGCGGTGAAA GCGTAA
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Protein sequence | MTKWVRFRAD GAIGFGTIAH SDIAVHDGEM FGANKPTGQT LQLGDVELLA PCAPRKIIGL WNNFHALAAK LNQSVPPEPL YFLKATTSVA AHGAVVDRPA SYDGKVVYEG ELGVVIGKEC RGVSEADAAS HIFGYTCVND ITAADILNRD PSFPQWSRAK SFDGFGPFGP AIVAGLDPAT LSIRTILNGA ERQNYPVADM IFSPARLVSL ISRDMTLEPG DLICCGTSVG VGVMKEPVNS VTIAIEGIGE LHNEFRQAVK A
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