| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1958 |
|---|
| Symbol | |
|---|
| ID | 4022440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2197957 |
|---|
| End bp | 2199549 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637962151 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_569094 |
|---|
| Protein GI | 91976435 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.452075 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATGT CCGAGCATCA AAGCCGCGAA CCTGCCGGCC GGCCCTTGTC GCCCGACGAA
GCGGCGGCGG AACTCTCGCA CAGCTCCACG GACGTGATCG ATCTCGGCCA TGCGCCGCCG
CTGGCGCCGT CCGCGCCGCT GACCACGGAC GAGGTCCGCA CCATCCTGTT GAGCCTGTTG
CTGGCGATGT TCCTCGCCGC GCTCGACCAG ACCATCGTGG CGACCGCGTT GCCGACGATC
GGGCGGCAGT TCGGCGACGT CGAGAATCTG TCCTGGGTGA TCACCGCCTA TCTGTTGTCC
TCGACCGCGG TGGCGCCGGT GTTCGGCAGC CTCTGCGATA TCTACGGCCG CCGCGCCACG
ATCATCGCGG CGCTCAGCCT GTTCATCGCC GGCTCGGTGA TGTGCGCGCT GGCGCCGAGC
GTTCTGGTGC TGATCCTCGG CCGCGCGTTG CAGGGGCTCG GCGGCGGCGG GATCATGCCG
GTGGTGCAGA CGGTGATCTC CGACGTGGTC AGCCCACGCG AGCGCGGCAA GTATCAGGCG
TATTTCTCCG GCGTCTGGGT GGCGGCGGGA ATCGGCGGCC CGGTGCTCGG CGGGGCCTTC
GCCGAGCATC TGCACTGGTC GATGATCTTC TGGATCAATC TGCCGCTGTC GATCGGCGCG
CTGGCGCTGC TGCTGCCGAA GATGGCGAAG ATTCCGGTGT ATCACCGCCG TCGCAAGGTC
GACTGGCTCG GCGGCGTGCT GCTGATGGCC TCGGCGCTGG CGGTGATGCT GGTGCTGACC
TGGGGCGGCA CGCGGTTTTC GTGGCTGTCG CCGGTGATCC TGGCGCTCGC CGGCGGCGCG
GTGCTGTTCG CGGCGAGCTT CATCTGGCAC GCGCTGCGCG AGCCGGAGCC GTTCCTGCCG
CTGCAATTGA TGGGCGGCAC GGTGGTGCCG TGGGCGATGG CGGCGGGCGG CTTCGCGATG
GGCGCGATGA TCGGGCTCAC CGTGCACATC CCGCTGTATT ACGAGGCGGT GTATCACCTC
AGCGCCAGCG CCTCGGGTCT GGCGCTGATC CCGATCGCCG CGGTCTCGGT GTTCGGCGCG
GCGTTCACCG GCCGCGCCAT GACGCATCTC GATCATTACA AGCGGATCGC GATCATCGGC
ACCGGCTTCT CGGCGCTGAT GGCGGCGGCG ATCGCGCTGC TGACGCCGTT GCCGCTGTGG
GCGTTCCTGA CGCTGCTGTC GCTGTTCTCG CTCGGCCTCG GTACGGTGTT TCCGGTCAGC
ATGGTGTCGA TCCAGAACGC GGTGCCGCGA CCGCAGATCG GCACCGCCAC CGGCGCGATG
AACTTCTTCC GCGCGCTGAT GTCGTCGTTC ACGGTGGCGG CGTTCACCGC GGTGCTGCTG
ATCACGTTCG GCGGCGAGAT CCAGCTCGGC GGCGCAGAGC ATCGCCACGC GGTCGGCAGC
GTCGCCTCCG CCGACATGGT GGCGGCGTTC CGCTGGGTGT TCGGCGCGGC GGCATTGATG
CTGGCCGGCT CGGCGATCTG CGTCGCGATC ATGGAGGAGC GCCGGCTCGC CGGCCCGGAC
AACACGCCGC CGCCGCTGGA GCTGGCGGAG TAG
|
|---|
| Protein sequence | MSMSEHQSRE PAGRPLSPDE AAAELSHSST DVIDLGHAPP LAPSAPLTTD EVRTILLSLL
LAMFLAALDQ TIVATALPTI GRQFGDVENL SWVITAYLLS STAVAPVFGS LCDIYGRRAT
IIAALSLFIA GSVMCALAPS VLVLILGRAL QGLGGGGIMP VVQTVISDVV SPRERGKYQA
YFSGVWVAAG IGGPVLGGAF AEHLHWSMIF WINLPLSIGA LALLLPKMAK IPVYHRRRKV
DWLGGVLLMA SALAVMLVLT WGGTRFSWLS PVILALAGGA VLFAASFIWH ALREPEPFLP
LQLMGGTVVP WAMAAGGFAM GAMIGLTVHI PLYYEAVYHL SASASGLALI PIAAVSVFGA
AFTGRAMTHL DHYKRIAIIG TGFSALMAAA IALLTPLPLW AFLTLLSLFS LGLGTVFPVS
MVSIQNAVPR PQIGTATGAM NFFRALMSSF TVAAFTAVLL ITFGGEIQLG GAEHRHAVGS
VASADMVAAF RWVFGAAALM LAGSAICVAI MEERRLAGPD NTPPPLELAE
|
|---|
| |