| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1907 |
|---|
| Symbol | |
|---|
| ID | 4022389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 2144351 |
|---|
| End bp | 2145769 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637962100 |
|---|
| Product | Type I secretion outer membrane protein, TolC |
|---|
| Protein accession | YP_569043 |
|---|
| Protein GI | 91976384 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTGGT GGACTGGAAT TATCAGCAAC GCGGGAAGCG CTGCACGTCG TTCGTCCGCG
GGACTTTGTG CCGCGGCGAT CGGTGTCGCG CTGACAGGAC CGGTATCTGC CGAGGGGCTC
CCCGACGCAC TTGCCAAGGC CTATCAGTTC AATCCGCAGC TCAATGCCGA ACGCGCCCGG
CAGCGCGCGA CTGACGAGAA CGTGCCGGCG GCGCTATCCG GCTACCGACC GCAGATCGTC
GCCAGCCTCG GCACCGGGTT GCAGGCGGTT CGCAATCTGC TGCCCGACAA CACCATTCAG
ACCGCGACGC TGAAGCCGTG GACCATCGGC GTCACCGTGA CGCAGACGCT GTTCAACGGC
TTCAGAACCG CCAACAGTGT GCGGGTCGCC GAGCTGCAGG TGAAATCCGG CCGCGAGGCG
CTGCGCAATG TCGGCCAGGG CGTGCTGCTC GACGCGGTGA CCGCCTACAC TAACGTGCTC
GCCAATCAGG CGCTGGTGGC GGCGCAGAAG TCCAACGTCG ACTTTCTCGG CCAGACGCTC
GACATCACCA ACAAGCGGCT GAATGCCGGC GACGTCACCC CGACCGATAC TGCGCAGGCC
GAAGCGCGGC TGAATCGCGG CCGCGCCGAT CTCAACGCCG CCGAAGTGAA CCTCGCGGTC
AGCGAGGCAA CCTATGCGCA GGTGGTCGGT AACGCGCCGT CACGGCTCAG CCCCGCATCG
CCGGTCGACC GGCTGCTGCC GCGGAGCCGC GAAGACGCAG TTTCGTTGGC GATGCAGGGT
AATCCCGCGG TGCTGGCGGC GGGCTTCGAC GTCGACGTCG CGACCACGAC GATCAAGGTC
GCCGAAGGCA GCTTATTGCC GTCCATCACC TTGCAGGGGA GCGCCAGCCG AAGCCGCGCC
ACCGATTCGA CTCTCGGCAG CCAGGGCGTT GACCAAGCCT CGGTCGTCGG CCAGATCGCC
GCGCCGATCT ACGACGGCGG ATTTGCCGCG GCGCAAACCC GGCAGTCGAA GGAAATCGCG
TCGCAGAGCC GGCTGGTGCT CGATCAGATC CGCAACCAAT CGCGTACGGC TGCGATCGGC
GCCTGGGTGA GCAATGAAGG CTCCAAGATT GCCGTCAGCG CCTCGGAATC GGAAGTTCGC
GCCGCCGAAA TCGCGTTGAA GGGCGTCAGC CGCGAGGCCC AGGGCGGTCA GCGGACCACC
GTCGACGTGC TGAACTCACA GCAGGATCTG ACACAGGCGC GGGCGCGTCT GATCGGCGCC
CAGCGCGATC GCGTGATCGC CTCCTACACC CTGCTCAGCG CAATCGGCCG ACTCGACGTC
AAGACGCTCG GGCTGAACAC GCCGGACTAT CTGCCGGATG TACACTATCA CCAGGTTCGT
GACGCTTGGC ATGGCCTGCG CACGCCGTCC GGTGACTAG
|
|---|
| Protein sequence | MDWWTGIISN AGSAARRSSA GLCAAAIGVA LTGPVSAEGL PDALAKAYQF NPQLNAERAR
QRATDENVPA ALSGYRPQIV ASLGTGLQAV RNLLPDNTIQ TATLKPWTIG VTVTQTLFNG
FRTANSVRVA ELQVKSGREA LRNVGQGVLL DAVTAYTNVL ANQALVAAQK SNVDFLGQTL
DITNKRLNAG DVTPTDTAQA EARLNRGRAD LNAAEVNLAV SEATYAQVVG NAPSRLSPAS
PVDRLLPRSR EDAVSLAMQG NPAVLAAGFD VDVATTTIKV AEGSLLPSIT LQGSASRSRA
TDSTLGSQGV DQASVVGQIA APIYDGGFAA AQTRQSKEIA SQSRLVLDQI RNQSRTAAIG
AWVSNEGSKI AVSASESEVR AAEIALKGVS REAQGGQRTT VDVLNSQQDL TQARARLIGA
QRDRVIASYT LLSAIGRLDV KTLGLNTPDY LPDVHYHQVR DAWHGLRTPS GD
|
|---|
| |