| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1778 |
|---|
| Symbol | |
|---|
| ID | 4022260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 1993277 |
|---|
| End bp | 1994611 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637961972 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_568915 |
|---|
| Protein GI | 91976256 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.416814 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTGCGCG TGGCCAGCAT TGCCCCCGCC GAGTCGAAGG CCGCCGCCCA AGCCGGCGCC
GGTTTCATCT TCAAAAAAGC CCTGATCAGC GCCCTCGTCG GGCTGGTTTT GTTTTCGCTG
ATGATCGGCG TGCGGACCGA AGCAGGACCC GAAGGGCAAC TGATCTACTG GACTCGGTTC
CCAGAACTCG CCGGCATGGT CGCAGCGGTG TTCGTTGGTT CGATCGTGGT CGAATTGCTG
CGACGCTGGT GGGGTCCAGT CGATACGCCG AGGCTGATGC CCGAAGGCGC ACGCAAGACG
CTCGCTGTCG CCGGCCGCGC CGTCGCCCCG GTTCTGCTGA TCTTCACCTT TCTGGTGCCG
GTGATCTTCT ACGACCAGCG CTACATTCTC GACCTCGGCA TCCTGGTGCT GACTTACGTG
ATGCTCGGCT GGGGGCTGAA CATCGTGGTC GGCCTCGCCG GCTTGCTCGA CCTCGGCTAT
GTCGCGTTCT ATGCCGTCGG CGCCTATTCC TACGCGTTGC TCGCCACCAA TTTCGGGCTG
TCGTTCTGGG TCTGCCTGCC GCTCGCCGGC ATTCTCGCCG CGTTCTGGGG CGTGCTGCTC
GGCTTCCCGG TGCTGCGGCT GCGCGGCGAC TATCTCGCCA TCGTCACGCT CGCGTTCGGC
GAGATCATCC GCCTCGTCAT CATCAACTGG CAGAGCCTCA CCGGCGGCCC GAACGGCGTC
AGCGGCATTC CGCGACCGAC CTTGTTCGGC ATTCCGCTGG TGCCCGGCGA AAACGGCCTC
GCCGCGCTGC TCGGAATTCC GTTCTCGCCA TCGCAGCGGC TGGTGTTCTT GTTCTATCTG
ATCCTGGCGC TGGCGCTGGT GACCAACTGG GCCACGATCC GGCTGAGACG GCTGCCGATC
GGCCGCGCCT GGGAAGCGCT GCGCGAGGAC GAAGTCGCCT GCCGCGCGCT CGGCATCAAC
ACCACCACGA CCAAGCTGAC AGCATTCGCC ACCGGTGCGA TGTTCGGCGG CTTCGCCGGC
GCCTTCTTCG CGACGCGGCA GGGCTTCATC TCTCCGGAAT CCTTCACCTT CCAGGAATCG
GCGCTGGTGC TGGCGATCGT CGTGCTCGGC GGCATGGGCT CGCAGCTCGG CGTCGCCCTC
GCCGCGCTGA CGCTGATCGG CGGTTTCGAA CTGTTCCGCG GCCTCGATCA GTTCCGGATG
CTGGTGTTCG GCCTGTCGAT GGTGTTCCTG ATGGTCTGGC GGCCGCGCGG CCTGATCGGC
CATCGCGCGC CGACCGTGTA TCTCGAGCGC AATCAGACGA TCTCGTCCGA CCTCGTCAAG
GAAGGCCACG GATGA
|
|---|
| Protein sequence | MVRVASIAPA ESKAAAQAGA GFIFKKALIS ALVGLVLFSL MIGVRTEAGP EGQLIYWTRF
PELAGMVAAV FVGSIVVELL RRWWGPVDTP RLMPEGARKT LAVAGRAVAP VLLIFTFLVP
VIFYDQRYIL DLGILVLTYV MLGWGLNIVV GLAGLLDLGY VAFYAVGAYS YALLATNFGL
SFWVCLPLAG ILAAFWGVLL GFPVLRLRGD YLAIVTLAFG EIIRLVIINW QSLTGGPNGV
SGIPRPTLFG IPLVPGENGL AALLGIPFSP SQRLVFLFYL ILALALVTNW ATIRLRRLPI
GRAWEALRED EVACRALGIN TTTTKLTAFA TGAMFGGFAG AFFATRQGFI SPESFTFQES
ALVLAIVVLG GMGSQLGVAL AALTLIGGFE LFRGLDQFRM LVFGLSMVFL MVWRPRGLIG
HRAPTVYLER NQTISSDLVK EGHG
|
|---|
| |