Gene RPD_1708 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1708 
Symbol 
ID4022188 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand+ 
Start bp1922059 
End bp1923714 
Gene Length1656 bp 
Protein Length551 aa 
Translation table11 
GC content65% 
IMG OID637961902 
Producttartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit 
Protein accessionYP_568845 
Protein GI91976186 
COG category[C] Energy production and conversion 
COG ID[COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain 
TIGRFAM ID[TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGCTC CCACGCCTGT TCCGTCCGCC GCTACCCCGG TTCCGCCCTA CAAGCACACG 
CCGCTGTTTC CGCTGGGCCC GGACGAGACG CCGTATCGCA AGATCACGGC GGAGGGCGTG 
CGGGTCGAGA CGGTGCTGGG CCGGCAGATG CTGGTGGTCG AGCGCGAAGC GCTGCGGGCG 
TTGTCGGAGG CGGCGTTCGG GGACATCAAC CATTATCTGC GCCCCGGCCA CCTGAAGCAG 
CTCCGCGCCA TCCTGGACGA TCCGGACGCG AGCCCGAACG ACAAGTTCGT GGCGCTGGAC 
TTTTTGAAGA ACGCCAACAT CTCCGCCGGC GGCGTGCTGC CGATGTGCCA GGACACCGGC 
ACCGCGATCA TCATGGGCAA GAAGGGCTGC AACGTCATCA CCGACGGCAG CGACGAGGCG 
GCGCTGAGCG AGGGCGCGCG CGATGCCTAT CTGCGCCGCA ATCTGCGCTA CTCGCAGGTC 
GCTCCCTTGT CGATGTTCGA GGAAAAGAAC ACCGCCAACA ACATGCCGGC GCAGTGCGAG 
ATCTACGCCG AGGGCGATGA CGCCTACAAG TTCATGTTCA TGGCCAAGGG CGGCGGCTCG 
GCCAATAAGA GCTTCCTGTT CCAGGCGACG CCATCGGTGC TGACCCGCGA CCGGCTGCTG 
GCGTTCCTGA AAGAGAAGAT CAAGACGCTC GGCACCGCGG CGTGCCCGCC CTATCACCTT 
GCGATCGTGA TCGGCGGCAC CTCGGTCGAG TCGACCATGA AGACGGTGAA GCTCGCCTCG 
GCGAAATATC TCGATGCGCT GCCCACCCAG GGCTCGGAAA ACGGCAATGC CTTCCGCGAT 
CTGGAGATGG AGCAGGACAT CCTGAAGATG ACCCAGTCGC TCGGCGTCGG CGCGCAGTTC 
GGCGGCAAGT ATTTCTGCCA CGACGTCCGC GTCATCCGGC TGCCGCGCCA CGGCGCGTCG 
CTGCCGATCG GACTCGGCGT GTCGTGTTCG GCCGATCGCC AGGTGCTCGG CAAGATCACC 
CGCGACGGCG TCTATCTCGA GGAGTTGGAG CATCATCCGG CGCAGTATCT GCCTGAGGTG 
GAGCAGGCGC TCGGCGGCGA GGTGGTGAAG ATCGACCTCG ATCAGCCGAT GAAGGATATC 
CTCGCGACGC TGTCGAACTA TCCGACCAAG ACCCGGCTGT CGCTGACCGG TACGATGATC 
GTCGCGCGCG ACGCCGCCCA CGCCAAGCTG CGCGACCGCC TGGAGAAGGG CGAGCCGCTG 
CCGGACTATT TCAAGAATCA TCCGGTGTAC TATGCGGGCC CCGCCAAGAC GCCCGATGGC 
TATGCCTCGG GTGCGTTCGG GCCGACCACC GCGGGGCGGA TGGATTCCTT CGTCGATCAG 
TTCCAGGCCG CCGGCGGCTC GATGGTGATG GTCGCGAAGG GCAACCGCGC GCCCGCGGTG 
CGCGAGGCCT GCAAGAAGTA TGGCGGCTTC TATCTCGGCT CGATCGGCGG CGCGGCGGCG 
AACCTCGCCG AGCACTGCAT CAAGAAGGTC GAGGTGCTGG AATATCCCGA GCTCGGCATG 
GAAGCGATCT GGCGGATCGA GGTGGTCGAC TTCCCGGCCT TCATCATCGT CGATGACAAG 
GGCAACGACT TCTTCAAGGA GTTGAATCTG GGGTGA
 
Protein sequence
MNAPTPVPSA ATPVPPYKHT PLFPLGPDET PYRKITAEGV RVETVLGRQM LVVEREALRA 
LSEAAFGDIN HYLRPGHLKQ LRAILDDPDA SPNDKFVALD FLKNANISAG GVLPMCQDTG 
TAIIMGKKGC NVITDGSDEA ALSEGARDAY LRRNLRYSQV APLSMFEEKN TANNMPAQCE 
IYAEGDDAYK FMFMAKGGGS ANKSFLFQAT PSVLTRDRLL AFLKEKIKTL GTAACPPYHL 
AIVIGGTSVE STMKTVKLAS AKYLDALPTQ GSENGNAFRD LEMEQDILKM TQSLGVGAQF 
GGKYFCHDVR VIRLPRHGAS LPIGLGVSCS ADRQVLGKIT RDGVYLEELE HHPAQYLPEV 
EQALGGEVVK IDLDQPMKDI LATLSNYPTK TRLSLTGTMI VARDAAHAKL RDRLEKGEPL 
PDYFKNHPVY YAGPAKTPDG YASGAFGPTT AGRMDSFVDQ FQAAGGSMVM VAKGNRAPAV 
REACKKYGGF YLGSIGGAAA NLAEHCIKKV EVLEYPELGM EAIWRIEVVD FPAFIIVDDK 
GNDFFKELNL G