| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1521 |
|---|
| Symbol | |
|---|
| ID | 4022001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 1696295 |
|---|
| End bp | 1697233 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637961716 |
|---|
| Product | phenylacetic acid degradation operon negative regulatory protein PaaX |
|---|
| Protein accession | YP_568659 |
|---|
| Protein GI | 91976000 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3327] Phenylacetic acid-responsive transcriptional repressor |
|---|
| TIGRFAM ID | [TIGR02277] phenylacetic acid degradation operon negative regulatory protein PaaX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAATC GCGTCTTGAG CCAGTGGATC GCAAAGCAAC TGGCTGATCG CCCGTTGCGG
GCGAACTCCC TGATCATCAC GATCTATGGC GACATGATTG CGCCGCTCGG CGGCACGGTG
TGGCTCGGCG GCTTCATCCG GCTTGTGGAG CCGCTCGGAC TCAACGCACG CGCGGTGCGC
ACGTCAGTCT TTCGCCTGTC GCGCGAAAAA TGGCTGGTCT CCGAGCAGAT CGGGCGGCGT
AGTTACTACA GCCTGACCGC GACAGGCCGC CGCCGCTTCG AACTTGCCTT CCGCCGAATC
TACGAAGATG CGAGCATTTC CTGGGCCGGC GATTGGCAAG TGGTGTTGAC GCCGGGCGAC
AGTCTGACGC CGGCGCTGCG CAAGGAGCTG CTGTGGGCGG GCTATGCCGC TATTGCGCCG
GGCGCTCTCG CTCATCCATC GGCGCAGACC GATGCATTGC TGGACATCCT GCAGAATGCC
GGTGCGCACG ACAAGGTCGT GGTGCTGCAG GCACGGACCC TCGGCGCGTT GTCCAGCCGA
CCGATCAAGG AATTGGTCGA CCAATGCTGG AATCTGGGCA AGGTCGCAGG CGAGTATCAG
AGCTTTATCG ATCGCTTTCG CAGCGTCGCG CGAGCGCTGC GCAGTACGTC GAATCTCGAC
CCGGAACAGT GCTTCATCAT CCGCACCCTG CTGATGCACG AGTTTCGCCG CGTGCAATTG
CGCGACCCTT CTTTGCCACG GCAATTGCTG CCGGACGATT GGCCCGGCGA CAAGGCACGA
GTGATGTGCC GGGATATCTA CCGACTCTGC TGGGTGAAGA CCGAAGAGCA TCTGATGCAG
ATGCTGGAGA CGTCGGATGG GCCATTGCCA CCGGCGGAGA AGAGTTTCCA TGCGCGGTTC
GGCGGCGTGA TCGACGAAGA GGCCGAACAG CGATCCTAG
|
|---|
| Protein sequence | MKNRVLSQWI AKQLADRPLR ANSLIITIYG DMIAPLGGTV WLGGFIRLVE PLGLNARAVR
TSVFRLSREK WLVSEQIGRR SYYSLTATGR RRFELAFRRI YEDASISWAG DWQVVLTPGD
SLTPALRKEL LWAGYAAIAP GALAHPSAQT DALLDILQNA GAHDKVVVLQ ARTLGALSSR
PIKELVDQCW NLGKVAGEYQ SFIDRFRSVA RALRSTSNLD PEQCFIIRTL LMHEFRRVQL
RDPSLPRQLL PDDWPGDKAR VMCRDIYRLC WVKTEEHLMQ MLETSDGPLP PAEKSFHARF
GGVIDEEAEQ RS
|
|---|
| |