| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1317 |
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| Symbol | |
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| ID | 4021794 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 1479825 |
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| End bp | 1481228 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637961510 |
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| Product | carotenoid oxygenase |
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| Protein accession | YP_568456 |
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| Protein GI | 91975797 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3670] Lignostilbene-alpha,beta-dioxygenase and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCAGG TAACGGGGAT TCCGGATGCG TGCGATAATC TTGCACCGAT CCCGATGGAA
TGCGACGCGC CGTCTCTGCC GATCAAAGGC GAGCTGCCGC GCGAGCTGAA CGGCACGCTG
TATCGCAACG GCGCCAACCC GCAATTCGCC TCGCCGAACG CGCACTGGTT CTTCGGCGAC
GGGATGCTCC ATGCTTTCAG GCTGGAGAAC GGCCGCGCCA GCTATCGCAA CCGCTGGGTT
CGCACGCCGA AATGGCTGGC CGAACATGCC GCCGGTCGGC CGCTCTACGG CGAGTTCAAC
CTCAAGCTGC CAGACGCGCC GCGCTCGGCG CCCGATGACG GCAACGTCGC CAACACCAAC
ATCGTGTTTC ACGCCGGCCG GCTGCTCGCG CTGGAAGAGG CGCATCTGCC GATCGAAATC
GAGCGCGACA CGCTGGCGAC CCGCGGCTAT TGCGACTATG GCGGCGCGCT GAAAGGGCCG
TTCACCGCGC ATCCGAAGAT CGACCCGGTG ACCGGCGAGA TGCTGTTCTT CGGCTACAAC
GCCGCCGGGC CGTTGAAACG GACGATGTCC TTCGGCGCGA TCGATGCGTC GGGTCATGTG
ACGCGATTCG AGTACTTCAA GGCGCCTTAC GCGGCGATGG TGCACGACTT CATCGTCACC
GAGAACTACG TGCTGTTTCC GATCCTGCCG CTGACCGGCA GCATCTGGCG GGCGATGCGC
GGTCGGCCGC CTTATGCCTG GGACCCCGGT AAGGGCTCCT ATGTCGGCGT GATGAAGCGC
ACCGGCACGA CGCGCGACAT CCGCTGGTTT CGCGGCGACG CATGCTTCGT GTTCCACGTC
ATGAATGCGT GGGAGGACGG GACAAAGATC GTCGCCGACG TGATGCAATC CGAGGAAGCG
CCGCTGTTCA CCCATCCCGA CGGCCGCCGC ACCGATCCCG AGAAGGGCCG CGCGCGGTTG
TGCCGCTGGA GCTTCGACCT CGCCGGCAAC ACCAATGCCT TCAAGCGCAG CTATCTCGAC
GACATCAGCG GCGAATTCCC GCGGATCGAC GAGCGCCGCG CCGGCCTGCG CAGCGGCCAC
GGCTGGTACG CCTGCGCCAG CCCGGAGACG CCGATGCTCG GGATGCTCAC CGGACTCGTG
CATGTCGACG GCAACGGCCA TCGTCGCGCG CGCTATCTGC TGCCAACCGG CGACACCATC
GGCGAGCCGG TGTTCGTGCC GCGCAAGCCG GATTCAGCCG AAGCCGATGG CTGGCTGCTG
ACCGTGATCT GGCGCAGCTG CGAAAACCGC AGCGACCTCG CGGTGTTCAA CGCCGCCGAC
ATCGCCGGCG GCCCGATCGC CTTGGTGCAA CTCGGCCACC GCGTCCCGGA CGGCTTTCAC
GGCAATTGGG TGGCGGCGGG GTGA
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| Protein sequence | MLQVTGIPDA CDNLAPIPME CDAPSLPIKG ELPRELNGTL YRNGANPQFA SPNAHWFFGD
GMLHAFRLEN GRASYRNRWV RTPKWLAEHA AGRPLYGEFN LKLPDAPRSA PDDGNVANTN
IVFHAGRLLA LEEAHLPIEI ERDTLATRGY CDYGGALKGP FTAHPKIDPV TGEMLFFGYN
AAGPLKRTMS FGAIDASGHV TRFEYFKAPY AAMVHDFIVT ENYVLFPILP LTGSIWRAMR
GRPPYAWDPG KGSYVGVMKR TGTTRDIRWF RGDACFVFHV MNAWEDGTKI VADVMQSEEA
PLFTHPDGRR TDPEKGRARL CRWSFDLAGN TNAFKRSYLD DISGEFPRID ERRAGLRSGH
GWYACASPET PMLGMLTGLV HVDGNGHRRA RYLLPTGDTI GEPVFVPRKP DSAEADGWLL
TVIWRSCENR SDLAVFNAAD IAGGPIALVQ LGHRVPDGFH GNWVAAG
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