Gene RPD_1245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1245 
Symbol 
ID4021721 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1407132 
End bp1407911 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content65% 
IMG OID637961437 
Producthypothetical protein 
Protein accessionYP_568384 
Protein GI91975725 
COG category[S] Function unknown 
COG ID[COG2135] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGCGGAC GCTTTGTCAT TACTTCGGCG CCAGCCGCGA TCAGGGAAGC GTTCGGCTAT 
GCCGATCAGC CGAATTTCCC AGCGCGCTAC AACATCGCAC CGACGCAACC CATCCCGGTC
GTGATCGTCG AAAACGGCGT CCGCCGGTTT CGCCTGATGC GCTGGGGGCT TTTGCCATCC
TGGGTTAAGG ATCCGCGAAA ATTCACGCTG TTGATCAACG CAAGGGCCGA GACCGTGCTG
GACAAGCCGG CGTTCCGGAA CGCGATCAAG CGGCGGCGCT GCCTGGTTCC GAGCGACGGC
TACTTTGAAT GGAAGCCGGC GGGCTCCCAC AAGCAACCGT ATTTCATTCA TCCGCGCGAC
GGCGGGCCGG TCGGGTTTGC CGCGCTGTGG GAGACCTGGG TCGGACCCAA CGGCGAGGAA
CTCGATACCA TCGCGATCGT CACGACCGCG GCGAGCGGCG GGCTTGCTGA TCTGCACGAC
CGCGTGCCGG TGACGATCGC GCCGCCCGAC TACGCGCGCT GGCTCGACTG TGCCGATGTC
GACGCCGAGA GCGCCTGGTC GCTGTTGCGC CCGCCGGCCG AAGGCGTGTT CGTCTGGCAT
CCGGTCTCGA CCGCCGTCAA CCGCGTCGCC AACGACAATG CTCAGCTGAT CCTGCCGATC
GCCGCAGAGG AGATGGAGTC GGAAGCCCGA GCCGGCGCGG CGAAACGCGC GAAGTCCAAA
CCCGTACCGA ACAGCAAGCC GGCGTCATCC GATGACGACG GGCAGGGCTC GTTGTTTTAA
 
Protein sequence
MCGRFVITSA PAAIREAFGY ADQPNFPARY NIAPTQPIPV VIVENGVRRF RLMRWGLLPS 
WVKDPRKFTL LINARAETVL DKPAFRNAIK RRRCLVPSDG YFEWKPAGSH KQPYFIHPRD
GGPVGFAALW ETWVGPNGEE LDTIAIVTTA ASGGLADLHD RVPVTIAPPD YARWLDCADV
DAESAWSLLR PPAEGVFVWH PVSTAVNRVA NDNAQLILPI AAEEMESEAR AGAAKRAKSK
PVPNSKPASS DDDGQGSLF