Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_1131 |
Symbol | |
ID | 4021607 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 1286377 |
End bp | 1287117 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637961323 |
Product | nuclease (SNase-like) |
Protein accession | YP_568270 |
Protein GI | 91975611 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1525] Micrococcal nuclease (thermonuclease) homologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.844533 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.680053 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTGCGG TCATTTTCGT GTTGGCGTTT CTGGTCGGCG CGCCGGCCTT TGCCGTGGCT GCCGATGCGA TCGTCCGGGA CGCCGCGACG CTGCAGCTCG GCGGCGTGAC TTATCGGCTG GAGGGCATCG ACGCCCCCGA GCTCGACCAG CGATGTATCA GCGAGTTCGC CGATCCCTCG ACCTGCGGGA TCGAGGCCCG CGACGCGGCG GTGAAGCTGA TCGGCGGCCG CGCCGTCGCC TGCCGCGATC TCGGCCCGGA CCCGGTGTTC AAGGGGCGCC GGATCGGCGC CTGCACAATC GCGGGCGACA ATCTGAGCCA GCAACTCGTC AAGGCCGGAC TGGCGCTGAG CGCGGACCCC AAGGGCCGCT TCGCCGCCGA CGAAGCCAAG GCCAAGGCGG ATCGCGTGGC GTTGTGGAAG GGCTGCTTCG TCGCGCCGCA AAGCTTCCGG CAATGGAACA AGACCGCGCC GCTGCTCGGC GCCGCCTGCC GCGACGACCG GCAGGCCGAG ATGCTCGACG TGATGTTTCC GGACATGCCG CCGATGCCGG ATGGCTGCAA CATCAAAGGC AAGCTCGCCA AGCGCGCCCG CATCACCGGC AATGTCGGCG TCTATCAACT GCAGGGATGC CCGAGCTACG CCAGCCTCGC CAAGCCGAAC CGCTGGTTCT GCTCGGAAGA CGACGCCAGG GCCGCCGGGT TCCGCAAGGC TTACAATTGC AGGATCAGCG CCAAGCGCTG A
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Protein sequence | MVAVIFVLAF LVGAPAFAVA ADAIVRDAAT LQLGGVTYRL EGIDAPELDQ RCISEFADPS TCGIEARDAA VKLIGGRAVA CRDLGPDPVF KGRRIGACTI AGDNLSQQLV KAGLALSADP KGRFAADEAK AKADRVALWK GCFVAPQSFR QWNKTAPLLG AACRDDRQAE MLDVMFPDMP PMPDGCNIKG KLAKRARITG NVGVYQLQGC PSYASLAKPN RWFCSEDDAR AAGFRKAYNC RISAKR
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