| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1013 |
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| Symbol | |
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| ID | 4021488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1150835 |
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| End bp | 1152772 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637961204 |
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| Product | Outer membrane autotransporter barrel |
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| Protein accession | YP_568152 |
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| Protein GI | 91975493 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3637] Opacity protein and related surface antigens |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.645383 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.106647 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACACG CGCGGACCCG AATTCTGGCA GGCTTCGCTT TCGCGATGGC CGCCTCCGTC
TCCACCGGCG CCTTGGCCGA ATGTACCGGC ACAGGCAGCT TCGTTCCGGG CGCCGTGATT
CCGGGCACCA ATTTCAGTCC GAGCGCGCTC TTGCCGTTCG CCGCGGGCGG TGCGGTGAAT
TCCCTCGTCT CGGCGATCAA CACCGCCAAC ACGGCATTCC TCACCCAATC GACCGCCTTC
GTGAGCGCCC CGCGCAATCC GGCGCCGAAT CAGGAAGGCG GCGGCGTCTG GACCCGTGCG
ATCGGCGGTG AAGTCACCAC CAAATCGACC AGCACGACCT CCAACGTGTC GCTCGGGGGT
GTCGGACTGC CGGGCTCGGT GAACTGCAAC AACGAGAACA AGCTCAGCTT CGCTGGCGTC
CAGGTCGGGG CGGATACCTC GATTTTGAAC TACAACGGCT GGAATATGCA TCTCGGCTCG
ACCGTCGGCT ATCTCGGCGC CAAGTCCCGC GACAAGTCGT CGGCCGGTGC GCTGAACCCG
CTTGGCGGCA CTTTCGAAGA CACGCTGCAG GTGCCGTTTG CGGGCGTCTA TGTCGCGATC
ACCAAAGGCG GTTTCTTCGC CGACGGCCAG GTTCGCCTCG ATTATTATCA GAACTCGCTG
AGTGATCCGA TCGTCGGCGG TATCTTCAGC CAGAAGCTGG ATGCCCGTGG CCTCTCCTTC
ACCGGTAACG TCGGCTACAA CCATGCGTTG GAGAACAACT GGTTCATCGA GCCCTCGGCC
GGTATCGTGG TCTCGAAGGT CAAGGTCGAT CCGCTCAACG TGACCGGCTC GCTGGTGTTG
CCCGCGACCT TCACGCCGGG CGTCACGTTC CCCGGCCAGT TGCAGGTCGA CGATATCAAC
AGCACGCTCG GTCGCCTCAG CTTGCGCGGC GGCACCAGCA TCGCATCCGG CAACATGATC
TGGCAGCCCT TCGCCATTGC GAGCGTCTAT CATGAATTCA GCGGGGCGGT GACTTCCACG
TTCAACGGCG ATGCGGCGTT CAACGCGACC GGCATCCCGT CGGCGACCGG CACGATCTCC
AGCACCAACC TCGGCACCTA CGGCCAGTTC GGGCTCGGCG TCGCCGGCCA GCTCGTCAAC
ACCGGCCTGC TCGGCTACGT CCGTGCCGAC TATCGCACCG GTGATCATAT CGACGGCTAC
AGCCTGAACG GTGGCGTCCG CTACCAGTTC GCGCCCGACG CGATCGTCGC TGCGCCGCTC
TACACCAAGG CCGCGAAGGC TCCGGTGCTG GTCCGCTCGG CCTATAACTG GACCGGCTTC
TTCATCGGCG GCAGCTTCGG CGCACTGAAT GGCCGGACCG ACTGGACATT CCAGCCGGTC
GGCACGCGCA CCGATCCGCG TTTCGCCGGC GCGATCGGCG GCGGCCAGAT CGGTTATGAC
CATCAGTTCG GCAAGTGGGT GGTCGGCGTC GAAGGCAACC TGTTCGCGAC CAACGCCAAC
GGCGCCCGTC CCTGCCCGAA TGGCGTGTTC TTCACGTGTG AAAACAATGT GAGCTGGATG
GGCACTGCGA CCGCGAAGCT CGGCTACGCG TTCTGGGACC GCTCGCTCTG GTACGTCCGC
GGCGGCGGCG CCTTCGGCGA TCTCAAGGTC ACCACCAACT GCAACACCGG TCCGGTGGTT
CCCAATCCGG CATTCCTCGT CGTGGCGGGT TGCGGCGAAA GCGCCAGCCG CAACCGTGCC
GGCTGGACCA TTGGGTTCGG TTCGGAGTTC GCGCTGAGCA AGAACTGGAC GGTGCGCGCC
GAGACCAACT ATTTCGACAT GGGTCGCGAG CGCTACACGC TGCCGACCTC GACCATCGAC
GTCAAGGAAA ACGGTTTCAT CTCGACCGTC GGCCTCAACT ATCGCTTCGC GCCCACGGCG
CTGGTCGCAA AATACTGA
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| Protein sequence | MQHARTRILA GFAFAMAASV STGALAECTG TGSFVPGAVI PGTNFSPSAL LPFAAGGAVN
SLVSAINTAN TAFLTQSTAF VSAPRNPAPN QEGGGVWTRA IGGEVTTKST STTSNVSLGG
VGLPGSVNCN NENKLSFAGV QVGADTSILN YNGWNMHLGS TVGYLGAKSR DKSSAGALNP
LGGTFEDTLQ VPFAGVYVAI TKGGFFADGQ VRLDYYQNSL SDPIVGGIFS QKLDARGLSF
TGNVGYNHAL ENNWFIEPSA GIVVSKVKVD PLNVTGSLVL PATFTPGVTF PGQLQVDDIN
STLGRLSLRG GTSIASGNMI WQPFAIASVY HEFSGAVTST FNGDAAFNAT GIPSATGTIS
STNLGTYGQF GLGVAGQLVN TGLLGYVRAD YRTGDHIDGY SLNGGVRYQF APDAIVAAPL
YTKAAKAPVL VRSAYNWTGF FIGGSFGALN GRTDWTFQPV GTRTDPRFAG AIGGGQIGYD
HQFGKWVVGV EGNLFATNAN GARPCPNGVF FTCENNVSWM GTATAKLGYA FWDRSLWYVR
GGGAFGDLKV TTNCNTGPVV PNPAFLVVAG CGESASRNRA GWTIGFGSEF ALSKNWTVRA
ETNYFDMGRE RYTLPTSTID VKENGFISTV GLNYRFAPTA LVAKY
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