Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_0850 |
Symbol | |
ID | 4021324 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 954761 |
End bp | 956188 |
Gene Length | 1428 bp |
Protein Length | 475 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637961040 |
Product | homospermidine synthase |
Protein accession | YP_567989 |
Protein GI | 91975330 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG5310] Homospermidine synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.369039 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGACCGCAC ATCCCGTCCA CGCACGCATC GATGGCCCCA TCGTGATGAT CGGCTTCGGC TCGATCGGCA AGGGCGCGCT GCCCTTGATC GAGCGTCACT TCGCGTACGA CAAGAAGCGC TTCGTGATCA TCGATCCGCA TGCCGACGAC GAACTGGCCA GGAAGCACGG CGTCCGCTTC ATCAAGCAGG CGGTCACCCG CGACAACTAC CACGAGTTGC TGATCCCGCT GCTCACCGAA GGCGGCGGCC AGGGGTTCTG CGTCAACCTG TCGGTCGACA CCGGCTCGGT CGACCTGATG ACGATGTGCC GTGAGATCGG CGCGCTGTAC ATCGACACCG TCGTCGAGCC CTGGCTCGGC TTCTATTTCG ACAAGAGCGC CGGCCCGGAG AAGCGCTCCA ACTACGCACT GCGCGAGACG CTGCTGGCGG CCAAGGCCAA GAGCCCGGGC GGCACCACCG CGGTCTCCAC CTGCGGCGCC AATCCGGGCA TGGTGTCGTG GTTCGTCAAG CAGGCACTGG TTGATATCGC GCGCGACACC GGCACTGAAT ACAACGAGCC GAAGAGCCGC GACGGCTGGG CGCAGCTCGC GCACAAGCTC GGCGTCAAGG GCATCCACAT CGCCGAGCGC GACACCCAGC GCGCGAAGAA TCCGAAGCCG ATGGACGTGT TCGTCAACAC CTGGTCGGTG GAAGGCTTCG TCTCCGAGGG GCTGCAGCCG TCCGAACTCG GCTGGGGCAC CCACGAGACC TGGATGCCGG ACAACGGACG CAAGCACACC GACGGCTGCG GCGCGGCGAT CTATCTGTTG CAGGCCGGCG CCAACACCCG GGTCCGTTCG TGGTGCCCGA CGCCGGGCGC GCAATACGGC TTCCTCGTCA CTCACAACGA ATCGATCTCG ATCGCCGATT ACTTCACGGT GCGCGACGGC CAGAACGTGA TCTACCGGCC GACCTGTCAC TACGCCTACC ACCCGGCTAA CGACGCCGTG CTGTCGATGC ACGAGATGTT CGGCGCCACC GGCAAGATGC AGTCGTCCTG GCACATCCTC GACGAGAACG AGATCGTCGA CGGCATCGAC GAACTCGGCG TGCTGGTCTA CGGCCACGCC AAGAACGCCT ATTGGTTCGG CTCGCAACTC TCGATCGAGG AAACCCGCCG GATCGCCCCG TATCAGAACG CCACGGGCCT GCAGGTGTCG TCGGCGGTGA TCGCCGGCAT GGTCTGGGCG CTGGAGAATC CCGAAGCCGG CATCGTCGAG GCCGACGAGA TGGACTACAA GCGCTGCCTC GAGGTGCAGA GGCCGTATCT CGGCCCGGTC AAGGGCTACT ATACCGACTG GACTCCGCTC AGCGATCGCC CTGGCCTGTT CCCCGAGGAC ATCGACACCT CGGACCCGTG GCAGTTCCGC AACGTCCTGG TCCGCTGA
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Protein sequence | MTAHPVHARI DGPIVMIGFG SIGKGALPLI ERHFAYDKKR FVIIDPHADD ELARKHGVRF IKQAVTRDNY HELLIPLLTE GGGQGFCVNL SVDTGSVDLM TMCREIGALY IDTVVEPWLG FYFDKSAGPE KRSNYALRET LLAAKAKSPG GTTAVSTCGA NPGMVSWFVK QALVDIARDT GTEYNEPKSR DGWAQLAHKL GVKGIHIAER DTQRAKNPKP MDVFVNTWSV EGFVSEGLQP SELGWGTHET WMPDNGRKHT DGCGAAIYLL QAGANTRVRS WCPTPGAQYG FLVTHNESIS IADYFTVRDG QNVIYRPTCH YAYHPANDAV LSMHEMFGAT GKMQSSWHIL DENEIVDGID ELGVLVYGHA KNAYWFGSQL SIEETRRIAP YQNATGLQVS SAVIAGMVWA LENPEAGIVE ADEMDYKRCL EVQRPYLGPV KGYYTDWTPL SDRPGLFPED IDTSDPWQFR NVLVR
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