| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0791 |
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| Symbol | |
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| ID | 4021265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 887722 |
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| End bp | 889077 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637960981 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_567930 |
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| Protein GI | 91975271 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.412838 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGCATG AGGCCGCGCA GGCCGGAGTT TTGCCGCCCA CCGCCGTGAC CTCTCGACAG
GTCTTCGCCA TCGCCGGACC GGCGATGATC GCCAATTTGA CGACGCCGCT GCTCGGCGTC
GTTGCCACCA CCGCAATCGG ACGGCTCGGC GACGCCACGA TGCTCGGCGG CGTGGCGATG
ATGTCGGTGA TCTTCGACTG CCTGTTCTGG CTGTTCGGCT TCCTGCGGAT GAGCACGCTG
GCCTTCACCG CCCAGTCGAT CGGCGCCGGC GACACGCGCG AGGTGCCGGC GCATCTGCTT
CGCGGATTGA TCATCGCGAT CGCGGTCGGC GTGGTGCTGA TCGCGTTGCA GGGCCCGCTG
GCCGCCGCGC TGATCGGCGC GATGGGCGGC AGCGACGGCG TCAGCGCCGC GGCCAGGACC
TACTTCACGA TCAGGATCTG GTCGGCGCCG CTGGTGCTGG CGAATTTCGC AGTGCTCGGC
TGGCTGGTCG GACAGGCGCG CGCGACGCTC GCGCTCTCGG TGCAGGTCGC GATCAACCTG
GTCAATATCT CAGCGACCAT CGCGCTGGTG CTGTGGTTCG ACTTCGGCAT CGCCGGCGCG
GCGGTGGCGG CGGTGATCGC GGAGGGCTCG GGTCTGCTGA TCGGGCTTGT GATCGCCGCG
TGGCTCGGCC GCGGCATTCC GCGCACGTCG CGGGCGATGC TGTTCGATCC GAGCCGCCTG
AAGCGGATGT TCGCGGTCAA CCGCGACATC ATGCTGCGCA CCGCGGCGCT GATCGCGGTG
TTCCTGTTTT TCACGGCGCA AGGTGCCCGT GGCGGAGATG TGGTGCTTGC CACCAACTCC
GTGCTCAACA ATTTCCTGAT GGTCAGCGCG TTCTTTCTCG ACGGCCTCGC CAACGCCGCC
GAGCAGCTCT GCGGCAGGAC GCTCGGCGCA CGCGACCGCG ACGGATTCGT TTCCGCGACG
CGGCTGGTGA TCCTGTGGGG CTTCGCCTTT GCACTGGCGG TGAGCGCGAC CTACGCGTTC
GCCGGCCCGC TCCTGATCGA TGTGATGACG TCGAGCGCCG AGCTACGCAG CGCCGCCCGC
GACTATCTGT GGCTGGTAGC GCTCGCGCCG ATCCTCGGCG TGTTTGCCTT CGCCTATGAC
GGGGTGTACA TCGGCGCCAC CTGGGCGCGC GAGATGCGCA ATCTCATGCT GTTATCGCTG
CTCCTGTTCC TTCTCGCCTG GCTGGCGCTG CGCCCACTCG GCAACACTGG ACTGTGGATC
GCCCTGCTGT CGCACTATAT CTGGCGCGGT GGGCTGCAGG CGCTACGCTA TCCGGCGATG
CTGCGCGCTT CGTTTCCACC CGCCGCGGTC GGCTGA
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| Protein sequence | MKHEAAQAGV LPPTAVTSRQ VFAIAGPAMI ANLTTPLLGV VATTAIGRLG DATMLGGVAM
MSVIFDCLFW LFGFLRMSTL AFTAQSIGAG DTREVPAHLL RGLIIAIAVG VVLIALQGPL
AAALIGAMGG SDGVSAAART YFTIRIWSAP LVLANFAVLG WLVGQARATL ALSVQVAINL
VNISATIALV LWFDFGIAGA AVAAVIAEGS GLLIGLVIAA WLGRGIPRTS RAMLFDPSRL
KRMFAVNRDI MLRTAALIAV FLFFTAQGAR GGDVVLATNS VLNNFLMVSA FFLDGLANAA
EQLCGRTLGA RDRDGFVSAT RLVILWGFAF ALAVSATYAF AGPLLIDVMT SSAELRSAAR
DYLWLVALAP ILGVFAFAYD GVYIGATWAR EMRNLMLLSL LLFLLAWLAL RPLGNTGLWI
ALLSHYIWRG GLQALRYPAM LRASFPPAAV G
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