| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0479 |
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| Symbol | sdhA |
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| ID | 4020947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 553099 |
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| End bp | 554922 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637960666 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_567618 |
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| Protein GI | 91974959 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.666907 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGCGA ACGGCAACGG CGCACCGGCC GTGAACGGCC ACGCCTATCC GATCGAAGAC
CACGTCTATG ATGTCGTCGT GGTCGGCGCC GGCGGCGCAG GTTTGCGCGC GGTGGTGGGC
TGCAGTGAGG CGGGGCTTCG CACCGCCTGC ATCACCAAGG TGTTTCCGAC CCGCTCCCAC
ACCGTGGCGG CGCAGGGCGG CATCTCGGCC GCGCTCGGCA ACATGCACAA GGACGACTGG
CGCTGGCACA TGTACGACAC CGTGAAGGGG TCGGACTGGC TCGGCGACCA GGATTCGATC
GAATACATGG TGCGCAACGC GCCCGAGGCG GTCTACGAGC TCGAACATTG GGGCGTGCCG
TTCTCGCGCA CCGAAGAAGG CAAGATCTAT CAGCGCCCGT TCGGCGGCAT GACCATGGAA
TTCGGCAAGG GCCAGGCGCA GCGCACCTGC GCCGCCGCCG ACCGCACCGG CCATGCGATG
CTGCACACGA TGTACGGCCA GGCGCTGCGC CACGCCGCCG AATTCTACAT CGAGTTCTTC
GCGATCGACC TGATCATGGA CGATCAAGGC TGTTGCCGCG GCGTGATCGC CCTGAAACTC
GACGACGGCA CGCTGCATCG TTTCCGCGCC CAGACCACCA TTCTGGCCAC CGGCGGCTAC
GGCCGCGCCT ACGCCTCCTG CACCTCGGCG CACACCTGCA CCGGCGACGG CGGCGCGATG
GCGCTGCGCG CCGGTCTGCC GCTGCAGGAC ATGGAGTTCG TCCAGTTCCA CCCGACCGGG
ATCTATGGTT CGGGCTGCCT CGTCACCGAG GGCGCCCGCG GCGAGGGCGG CTATCTGGTC
AATTCCGAAG GCGAGCGCTT CATGGAGCGC TACGCGCCGT CCGCCAAGGA TCTCGCCTCG
CGCGACGTGG TGTCGCGCGC GATGACGATC GAAATGCGCG AGGGCCGCGG CGTCGGCAAG
AAGAAAGACC ACATCTTCCT GCATCTCGAC CATCTCGCGC CGGAAGTGCT GGCGGAGCGG
CTGCCGGGCA TCTCGGAATC GGCGCGGATC TTCGCCGGCG TCGACGTCAC CCGCGAGCCG
ATCCCGATCC TGCCGACCGT GCACTACAAC ATGGGCGGCA TCCCGACCAA TTTCCGCGGT
GAGGTCGTCA CCAAGAAGGA AGGCGACGAC AACGCCGTGG TGCCGGGCCT GATGGCGATC
GGCGAGGCCG CCTGCGTCTC CGTTCACGGC GCCAACCGCC TCGGCTCCAA CTCGCTGATC
GACCTCGTGG TGTTCGGCCG CGCCGCGGCG CTGCGCTGCG CCGAGAAGCT GACGATCAAC
GGCAAGCAGC CGGAGCTTCC GGCGGATTCC GCCGATGGCA CGCTGTCGCG GCTCGACAAA
TATCGCTACG CCTCGGGCGG CACCCCGACC GCCAAGCTGC GCGAGAGCAT GCAGCAGGTG
ATGCAGAACA ACTGCGCGGT GTTCCGCACC GGCGAGGTGC TGAGCGAGGG CAAGGACCTG
ATCCGCAAGG TGCATGGCGG CGTCGGCGAT ATCGGCGTGT CCGACCGCTC GCTGGTGTGG
AATTCCGACC TGGTCGAGAC GCTGGAATTC GACAATCTGA TCATCCAGGC GGTGGTGACG
ATGAACTCGG CCGCCAACCG CACCGAGAGC CGCGGCGCCC ATGCGCGCGA GGACTTCCCG
GATCGCGACG ACAAGCAGTG GATGAAGCAC ACGCTGGCCT GGATCGGCGA CGACGGCGAC
ACCACGATCG ATTATCGCCC GGTTCACGAC TACACGATGA CCAACGACGT CCAGTACATC
CCGCCGAAGC CGCGGGTGTA TTGA
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| Protein sequence | MAANGNGAPA VNGHAYPIED HVYDVVVVGA GGAGLRAVVG CSEAGLRTAC ITKVFPTRSH
TVAAQGGISA ALGNMHKDDW RWHMYDTVKG SDWLGDQDSI EYMVRNAPEA VYELEHWGVP
FSRTEEGKIY QRPFGGMTME FGKGQAQRTC AAADRTGHAM LHTMYGQALR HAAEFYIEFF
AIDLIMDDQG CCRGVIALKL DDGTLHRFRA QTTILATGGY GRAYASCTSA HTCTGDGGAM
ALRAGLPLQD MEFVQFHPTG IYGSGCLVTE GARGEGGYLV NSEGERFMER YAPSAKDLAS
RDVVSRAMTI EMREGRGVGK KKDHIFLHLD HLAPEVLAER LPGISESARI FAGVDVTREP
IPILPTVHYN MGGIPTNFRG EVVTKKEGDD NAVVPGLMAI GEAACVSVHG ANRLGSNSLI
DLVVFGRAAA LRCAEKLTIN GKQPELPADS ADGTLSRLDK YRYASGGTPT AKLRESMQQV
MQNNCAVFRT GEVLSEGKDL IRKVHGGVGD IGVSDRSLVW NSDLVETLEF DNLIIQAVVT
MNSAANRTES RGAHAREDFP DRDDKQWMKH TLAWIGDDGD TTIDYRPVHD YTMTNDVQYI
PPKPRVY
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