| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0340 |
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| Symbol | |
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| ID | 4020800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 394183 |
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| End bp | 394770 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637960519 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_567479 |
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| Protein GI | 91974820 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.847546 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.277076 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATCATC CTCGACGCGA CCCACGTGAA TCCGCGCATG ATTTGTCCGA CTGCATCGTG
CGGATCGCCA CGGATCAGGA CGAAGCGGCT TTCGATACGC TGTTCCGACA CTTCGCGCCG
CGGCTGAAAT CGTATTTCAC CAGGCGTGGC GGCGATCCGG CAATGGCGGA AGAGATCACC
CAAGAGACGA TGGTGCTGCT GTGGAAAAAC GCCGCGCAGT TCGATCCGTC GAAAGCCTCG
CCGGCAACCT GGATCTTCAC CATCGCGCGC AACCTCGGCA TCGACCGGTT GCGGCGCGCG
AAGCGACCGT CGTTCGATCC GAACGATCCG GCGTTCATCC CGGACGCCGA GGAGCCGCCG
GACCGCCAGT TTGAACGTGC CGAGGCGGAG CGCAGGGTTC GCGACGTCAT GGATACGCTG
TCAGCCAACG AGAAGAGTGT CTTGATGCTG TCGTTCTACG AAAATCAATC GCACGGCGAG
ATCGCCGAAC GTCTCGGTCT GCCAGTCGGC ACGGTGAAAT CGCGAATAAG GCTGGCGTTC
GGCAAGCTGC GCGCCGCGCT CGATGCACAG ACGGGAGCCG CACAATGA
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| Protein sequence | MDHPRRDPRE SAHDLSDCIV RIATDQDEAA FDTLFRHFAP RLKSYFTRRG GDPAMAEEIT
QETMVLLWKN AAQFDPSKAS PATWIFTIAR NLGIDRLRRA KRPSFDPNDP AFIPDAEEPP
DRQFERAEAE RRVRDVMDTL SANEKSVLML SFYENQSHGE IAERLGLPVG TVKSRIRLAF
GKLRAALDAQ TGAAQ
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