| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0227 |
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| Symbol | |
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| ID | 4020685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 262822 |
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| End bp | 264990 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637960406 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_567368 |
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| Protein GI | 91974709 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.133448 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.547858 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAATA AGCATTCCGT CGAAATCGAT TGGGGTGGGC GTCCGCTCAG GCTCGAGACC
GGCAAGGTCG CCCGCCAGGC TGACGGCGCC GTCGTCGCCA CCTATGGCGA GACCGTCGTG
CTCGCCACCG TGGTGGCCGC CAAGACGCCG CGCGAAGGCG TCGACTTCCT GCCGCTGACC
GTCGACTATC AGGAAAAGAC CTACGCGGCC GGCCGCATCC CCGGCGGTTA CTTCAAGCGC
GAGGGTCGCC CGACCGAGAA GGAGACGCTG GTCTCCCGCC TGATCGACCG TCCGATCCGT
CCGTTGTTCG CCGATGGCTG GCGCAACGAG ACCCAGGTGA TCGTCACCGT CCTGTCCCAC
GACATGGAGA ACGATCCGGA CATTCTGGCG CTGGTCGCCT CCTCGGCCGC GCTGACGCTG
TCCGGCGCGC CGTTCAAGGG CCCGATCGGC GCCGCCCGCG TCGGCTTCAT CAATGATGAA
TATGTGCTCA ACCCGGTGCT CGACGAGATG CCCGAGACCC AGCTCGATCT GGTCGTCGCC
GGCACGTCGG ACGCGGTGTT GATGGTCGAA TCCGAAGCCA AGGAGCTGTC GGAAGAGATC
ATGCTCGGTG CGGTGATGTT CGGTCACCGT CACTTCCAGC CGGTGATCGA CGCGATCATC
GCGCTCGCCG AAAAGGCCGC CAAGGAGCCG CGCGAACTCA CCGTCATCGA CGACTCGGCG
ATCGAGAAGG AGATGCTGGG TCTGGTCGAG CAGGAGCTGC GCGCCGCCTA CGCGATTGCG
GTCAAGCAGG AGCGCTACGC TGCGGTCGGC AAGGTCAAGG AGAAGGCGAT CGCGCACTTC
TTCCCGGAAG GCCAGGAGCC GAAATACGAC AAGCTCCGCA TCGCCGGCGT GTTCAAGGAG
CTCGAGGCCA AGATCGTTCG CTGGAACATC CTCGACACCG GCAAGCGCAT CGACGGCCGC
GATTCCAAGA CGGTCCGCAG CATCATCGCC GAAGCCGGCG TGCTGCCGCG CGCCCACGGT
TCGGCGCTGT TCACCCGCGG TGAGACCCAG GCGCTGGTGG TCACCACGCT CGGCACCGGC
GAGGACGAGC AGTATGTCGA CTCGCTGGCC GGAACGTACA AAGAGACGTT CCTGCTGCAC
TACAACTTCC CTCCCTACTC GGTCGGCGAG ACCGGCCGCC TCGGTGGTAC CAAGCGCCGC
GAGATCGGCC ACGGCAAGCT GGCGTGGCGT GCGATCCGTC CGGTGCTGCC GCCGCATCAC
GAGTTCCCCT ACACCATCCG CGTCGTCTCC GAGATCACCG AGTCGAACGG TTCGTCCTCG
ATGGCGTCGG TGTGCGGTGC CTCGCTGGCG CTGATGGATG CCGGCGTGCC GCTGAAGCGG
CCGACCGCGG GCATCGCGAT GGGCCTGATT CTCGAGGGTG AGCGCTTCGC GGTGCTGTCC
GACATCCTCG GCGACGAGGA TCATCTCGGC GACATGGACT TCAAGGTGGC CGGCACCGAG
CAGGGCGTCA CCTCGCTGCA GATGGACATC AAGATCGCCG GCATCACCGA AGAGATCATG
AAGGTGGCGC TCGGCCAGGC CAAGGACGGC CGCATCCACA TCCTGGGTGA GATGTCCAAG
GCGCTCGACC GCGCCCGCGC CGAGCTCGGC GAACACGCGC CGCGAATCGA GACCTTCAAG
ATCCCGACCG ACAAGATCCG TGAAGTGATC GGCACCGGCG GCAAGGTGAT CCGCGAGATC
GTCGAGAAGA CCGGCGCCAA GGTCAACATC GAGGACGACG GCACCGTCAA GGTCGCCTCG
TCGGACGGCG AGTCGATCAA GGCTGCGATC AAGTGGATCA AGTCGATCGC TTCCGATCCG
GAAGTCGGCG AGATCTACGA AGGCACCGTC GTCAAGGTGA TGGAGTTCGG CGCCTTCGTG
AACTTCTTCG GCGCCAAGGA CGGCCTCGTG CACATCAGCC AGCTCGCCGC CGGCCGCGTG
CAGAAGACCT CCGACGTCGT CAAGGAAGGC GACAAGGTCA AGGTCAAGCT GCTCGGCTTC
GACGATCGCG GCAAGACCCG GCTGTCGATG AAGGTCGTCG ATCAGGACAC CGGCGAAGAC
CTCGAGGCCA AGCAGAAGGC CGAAGCGAAG GCCGAAGACG AAGCCCCGGC GCAGGCCGCC
GGCGAGTAG
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| Protein sequence | MFNKHSVEID WGGRPLRLET GKVARQADGA VVATYGETVV LATVVAAKTP REGVDFLPLT
VDYQEKTYAA GRIPGGYFKR EGRPTEKETL VSRLIDRPIR PLFADGWRNE TQVIVTVLSH
DMENDPDILA LVASSAALTL SGAPFKGPIG AARVGFINDE YVLNPVLDEM PETQLDLVVA
GTSDAVLMVE SEAKELSEEI MLGAVMFGHR HFQPVIDAII ALAEKAAKEP RELTVIDDSA
IEKEMLGLVE QELRAAYAIA VKQERYAAVG KVKEKAIAHF FPEGQEPKYD KLRIAGVFKE
LEAKIVRWNI LDTGKRIDGR DSKTVRSIIA EAGVLPRAHG SALFTRGETQ ALVVTTLGTG
EDEQYVDSLA GTYKETFLLH YNFPPYSVGE TGRLGGTKRR EIGHGKLAWR AIRPVLPPHH
EFPYTIRVVS EITESNGSSS MASVCGASLA LMDAGVPLKR PTAGIAMGLI LEGERFAVLS
DILGDEDHLG DMDFKVAGTE QGVTSLQMDI KIAGITEEIM KVALGQAKDG RIHILGEMSK
ALDRARAELG EHAPRIETFK IPTDKIREVI GTGGKVIREI VEKTGAKVNI EDDGTVKVAS
SDGESIKAAI KWIKSIASDP EVGEIYEGTV VKVMEFGAFV NFFGAKDGLV HISQLAAGRV
QKTSDVVKEG DKVKVKLLGF DDRGKTRLSM KVVDQDTGED LEAKQKAEAK AEDEAPAQAA
GE
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