| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0202 |
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| Symbol | |
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| ID | 4020660 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 225807 |
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| End bp | 229286 |
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| Gene Length | 3480 bp |
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| Protein Length | 1159 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637960381 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_567343 |
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| Protein GI | 91974684 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGCGC CGCGCAGCAT TCCCGATCAG GCGCGCGAGC GTCAGATCCT CGCCTCCGAT
CCCTCGGCCT CGGTGTTCGT CTCGGCCAAT GCCGGCTCCG GCAAGACGCA TGTGCTGGTT
CAGCGGGTCA TTCGCCTGCT GCTCGATGGC GTGCCGCCGG AACGCATCCT GTGTATCACC
TTCACCAAAG CCGCCGCCGC CAACATGGCC GAGCGCGTCT TCACGACACT CGGTCGCTGG
GTGACGCTCG ACGACGAGGC GCTGACGGCT GCGATCAAGG CGACTGGTAT CAAGTCGGTT
GGGCCTTCTC TTCTGGCGCA AGCGCGAAAA CTGTTTGCCT GCGCGCTGGA GACGCCGGGC
GGGCTGAAGG TGCAGACCAT CCACGCGCTC TGCACCCGGT TGCTGCAGCA GTTTCCGTTC
GAGGCCAATG TGCCGGCGCG GTTCAGCGTG CTCGACGATC GCGATCAGGC CGAGCTGATG
CAGCGCGCCA GCCTCGCGGT GTTGCTGCAG GCGGCGGCCG CGCCGGACAG CGCGGCGGGG
CGGGCTCTGA CGTTGGCGAT GACCAGCGCC GCCGACGTCA CCTTCCGCGA GGTGGTGCAG
GAAGCCTGCA CCAGGCGCGA TCGCTTCCTC GCCTGGATCA CGCAGGCCGG CGGCGTCGAC
GGCGCCATGG CGCAGCTCTC GGCGACGCTC GGCGTCGCGC CGCAGGATCG CTGCGAAGAC
GTCGAGCGCG ACATCCTCGA CGGCCCGAAT CTGCCGCGCG CGCAATGGTC TACGGCAGCA
GCGATGTTCG AGTCGGGGAG CGCCAACGAC CAGGCGCAGG CGAAGCGTCT GCGCGCGGCG
CTCGCGCTGT CGGACGTGGC GCAGCTCGAC AAGTATTGCG AGGTGTTCTT CACCAAGGAC
GGCCCGCGCA AAAGTCTGGC CACCAAGAAG ATCGCCGACG CCGCGCCCGG GTTCGTCGAG
GATCTGAAGC GCGAAGGCGC GCGGCTCGAA GATCTGCTCG AGCGTCGCCG CGCGCTCCTG
ATGCGCGAGC GGACGCGGGC GCTGCTGGTG ATCGCGGCCG ACGTCGCCGA GCGGATCCGG
CGCGAGAAGC AGGAGCGTGG GCTTCTCGAT TATGACGATC TGATCGACAA GACGCTCGCG
ATGCTCGATA GCGGCGCGTC GAGCTGGGTG CATTTCAAGC TCGATCGTGG CGTCGACCAC
GTGCTGATCG ACGAGGCGCA GGACACCAGC CCGAAGCAAT GGGACATCGT CGCGCATCTG
ATCGCGGAAT TCACCGCCGG CGAGGGCGCG CGCGATGGCG TGCGGCGCAC GGTGTTCGCG
GTCGGCGACG AGAAGCAGTC GATCTTCTCG TTCCAGGGCG CGGTTCCGAA GGAATTCGCC
GAGCGGCGCG ATCTGTTGCA GCGGCGCTTC CACGGCGCCG GACTGAACTT CGAGAAGGTG
AGTTTCAACT ACTCGTTCCG CTCCGGCGCG ACGATCCTTC AGTCCGTGGA CCACGTGTTC
CGCGATCCCG ACATCTATCG CAGTATCCAC GCCGACGCCG CCTACCCGCT GCATCAATCG
CTGGCCGATG CCGGCCCGAG CGTGATCGAT CTGTGGCCGC TCGAACTGCC CGACGACAAG
CAGAACATCG AGGGCTGGCG TGCGCCGTTC GATGCGGTGT CGGAAACCAG TCCGGAGGTG
CGGCTGGCGC AGAAGGTGCA AGCCGAGATC GCGTCGCTGA TTGCGGGCGG CACGATGACG
GGCTCGCTCG GCGACCGGCG GCGGCTGCGT TTTGGCGATG TGCTCGTGCT GGTGCGCCGT
CGCGGCTCGG CGTTCGACGC GGTGATCCAG GCCCTGAAGC GCGGCGGCAT TCCGGTGGCC
GGCGCCGACC GGCTGAAGCT CACCGAGCAT ATCGCGATCA TCGATCTGAT GAATCTCGCC
GACGCGTTGC TGCTGCCGCA GGACGATCTT GCGCTCGCGG TGGCGCTGAA GAGCCCGCTG
TTCGGCCTCG ACGACGACGA TCTGTTCAGG CTGGCGTGGC GACGCAAAGG CTCGCTGCGC
CATGCGCTGC GCGAGAAGGC GGCCGGGGAC GCAAAGTTGG CAACCGCGTT GCAGCGGCTC
GATGCCTGCG CGGAGCGGTC GCAGACCGAC ACGCCATTCG GGTTCTACGC CTGGCTGCTC
GGCGGCGTCG GCGGCCGCGC AAGGATTTTG CGCAGGCTGG GGCCGGAAGC CAACGACGCG
CTCGACGAGT TTCTCGAATT GGCGCTGAGC TACGAGCAGA AGGCTGCGCC GTCGCTGCAG
GGCTTCATGG CGTGGCTGCG CGCCGCCGAT ACCGAGATCA AGCGCGACAT GGAAATCTCG
CGCGACGAAG TCCGGGTGAT GACCGTGCAT GGCGCCAAGG GTCTCGAGGC GCCGGTGGTG
TTCCTGGTCG ATACGACGTC GTCGCCGTCC GACACCCAGC GGCTCAATCT GATCCGGCTG
CCCGGCGGCA ATGCGCAGCC GGGCTCCGTC GGCGCGATGG TGTGGGCGGG CCGCAAGTCG
AACGATCCGC GCGTCGTCGA GCAGGCCCGC GCGGAGATGG TCAGCGAGAC CGAGGACGAA
TATCGCCGGC TGCTCTATGT GGCGATGACC CGCGCCGCCG ATCGGCTGAT CGTCGGCGGC
TGTATGCCCG GCAATCGCAA CGAGGTGCGC GCGCTGTCCT GGTACGATCT GATCAGCAAG
GGCTTGGAGA ACTCCGGCCT GACGATGCGC ACGGCGCCGC CGGATGGCGC GGTGAAGCGC
TATTGCCGTC CCGAGGACGA GGTCACAGAG ATCGCACCGT CCGAACAAGC GCCTGCCGCG
CCGCCCCTCG TCATGCCGGA CTGGCTGCAC AAGGCCGCGC CGGCGCTGCG CCGGCCGGAC
AATCTGTTGC GGCCATCCGA CCCGGACGAT GCCGATCATC GCCGCATCCG CCGCGGCGAA
ACGGAGGCGC AACGCCAGCG CGCCTTGCAG CGCGGCACGC TGGTGCACCG GCTGCTGCAG
TCGCTGCCCG ATCTGCCGGC CGACATTCGC GCCAATGCCG CCGACCGCTT CCTCCTCCGC
AACGCCGATG ATTGGAGCCC GCAGGAGCGC GACGCGCTCG CCGCGCGGGT GCTGGAGGTG
ATCAGCGACG ACCGCTTCGC CGCCGTCTTC GCTCCTGGCA GCCGCGCCGA AGTGCCGATC
GTCGGTCGCT TGCAGCGGCA TGGCGAGCCG GTGCTGATCT CCGGCCAGAT CGACCGGCTG
GTGGTGACCG ACGCCGAGGT CCTGATCGTC GACTACAAGA CCAATCACGC CCCGCCGCGC
AGTCTGGCGG AGACCCCGCC GGCTTACGTC CGCCAGCTCG CACTGTATCG GGCGGTGCTA
TCGCTGCTGT ATCCACAGCG GATCGTCCGC GCCGCCCTGC TATGGACCGA AGCGCCTGAA
ATCATGGAGA TTTCAGCCCC TGCGCTGGAC GCGGAGCAGG CCGCCTTGAC GGTGGCGTGA
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| Protein sequence | MSAPRSIPDQ ARERQILASD PSASVFVSAN AGSGKTHVLV QRVIRLLLDG VPPERILCIT
FTKAAAANMA ERVFTTLGRW VTLDDEALTA AIKATGIKSV GPSLLAQARK LFACALETPG
GLKVQTIHAL CTRLLQQFPF EANVPARFSV LDDRDQAELM QRASLAVLLQ AAAAPDSAAG
RALTLAMTSA ADVTFREVVQ EACTRRDRFL AWITQAGGVD GAMAQLSATL GVAPQDRCED
VERDILDGPN LPRAQWSTAA AMFESGSAND QAQAKRLRAA LALSDVAQLD KYCEVFFTKD
GPRKSLATKK IADAAPGFVE DLKREGARLE DLLERRRALL MRERTRALLV IAADVAERIR
REKQERGLLD YDDLIDKTLA MLDSGASSWV HFKLDRGVDH VLIDEAQDTS PKQWDIVAHL
IAEFTAGEGA RDGVRRTVFA VGDEKQSIFS FQGAVPKEFA ERRDLLQRRF HGAGLNFEKV
SFNYSFRSGA TILQSVDHVF RDPDIYRSIH ADAAYPLHQS LADAGPSVID LWPLELPDDK
QNIEGWRAPF DAVSETSPEV RLAQKVQAEI ASLIAGGTMT GSLGDRRRLR FGDVLVLVRR
RGSAFDAVIQ ALKRGGIPVA GADRLKLTEH IAIIDLMNLA DALLLPQDDL ALAVALKSPL
FGLDDDDLFR LAWRRKGSLR HALREKAAGD AKLATALQRL DACAERSQTD TPFGFYAWLL
GGVGGRARIL RRLGPEANDA LDEFLELALS YEQKAAPSLQ GFMAWLRAAD TEIKRDMEIS
RDEVRVMTVH GAKGLEAPVV FLVDTTSSPS DTQRLNLIRL PGGNAQPGSV GAMVWAGRKS
NDPRVVEQAR AEMVSETEDE YRRLLYVAMT RAADRLIVGG CMPGNRNEVR ALSWYDLISK
GLENSGLTMR TAPPDGAVKR YCRPEDEVTE IAPSEQAPAA PPLVMPDWLH KAAPALRRPD
NLLRPSDPDD ADHRRIRRGE TEAQRQRALQ RGTLVHRLLQ SLPDLPADIR ANAADRFLLR
NADDWSPQER DALAARVLEV ISDDRFAAVF APGSRAEVPI VGRLQRHGEP VLISGQIDRL
VVTDAEVLIV DYKTNHAPPR SLAETPPAYV RQLALYRAVL SLLYPQRIVR AALLWTEAPE
IMEISAPALD AEQAALTVA
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