Gene RPD_0081 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0081 
Symboldef 
ID4020536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp96621 
End bp97148 
Gene Length528 bp 
Protein Length175 aa 
Translation table11 
GC content62% 
IMG OID637960258 
Productpeptide deformylase 
Protein accessionYP_567222 
Protein GI91974563 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0242] N-formylmethionyl-tRNA deformylase 
TIGRFAM ID[TIGR00079] peptide deformylase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.364538 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0628749 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCTGC GTGAAATCAT CATCCTGCCG GATAAGCGGC TGCGTGAAAT CTCAAAGCCC 
GTCGCCGAGG TGACGCCGGA GATCCGCAAG CTCGCGGACG ACATGTTCGA GAGCATGTAC
GACGCGCCCG GCATCGGGCT CGCGGCGATT CAGATCGCCG AGCCGGTGCG GCTCATCACG
ATGGACATCG TGCGCAAGGA GGGCAACGGC AAGAGCGATC CGCGCGCCTT CATCAATCCG
GAAATCGTCG GCGCCTCGGC GGAGATGAAC GTCTACGAGG AAGGCTGCCT GTCGATCCCC
GAATATTACG CCGATGTCGA GCGGCCGGCA GTGGTCCGGA TCCGCTACAC CGATCTCGAC
GGCAACGTGA AGGAAGAGGA CGCCGACGGC CTGTTCGCGA CCTGCATCCA GCACGAAATC
GACCACCTCG ACGGCGTGCT GTTCGTCGAC CATCTGTCGA AGCTGAAGCG CGCCATGGTC
GTGCGCAAGT TCGAGAAGGC CGCCAAGCGC GGTATCAAAT ACGTCTGA
 
Protein sequence
MALREIIILP DKRLREISKP VAEVTPEIRK LADDMFESMY DAPGIGLAAI QIAEPVRLIT 
MDIVRKEGNG KSDPRAFINP EIVGASAEMN VYEEGCLSIP EYYADVERPA VVRIRYTDLD
GNVKEEDADG LFATCIQHEI DHLDGVLFVD HLSKLKRAMV VRKFEKAAKR GIKYV