Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4871 |
Symbol | |
ID | 3973673 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 5437679 |
End bp | 5439139 |
Gene Length | 1461 bp |
Protein Length | 486 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637927983 |
Product | pyridoxal-dependent decarboxylase |
Protein accession | YP_534712 |
Protein GI | 90426342 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.16102 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCACGA CGCGGCGCGA GGCCGCGGAC GCGTTGGGCC ACAGCGAGAC GCTCGATCCG CAAGACTGGG AGGAATTGCG CGCCCAGGGC CACCGCATGC TCGACGACAT GCTGGACTAT ATCGCCAAGG TCCGCGAACG CCCGGTGTGG CGGCCGATCC CCGCGGCGGT GCGCGGGCAA TTCCAGCAGG CGCTGCCGCG GGCGCCCTCC GACCTGAGCG ACGTCTATGG TGAGTTCAGC GAGCTGATTG CGCCTTACGC CACCGGCAAT GTGCATCCAG GCTTCATGGG CTGGGTGCAT GGCGGCGGCA CCCCGGTCGG GGTTTTGGCC GAGATGCTGG CGGCGGGGCT CAACGCCAAT TGCGGCGGCC GCAACCACAT GCCGATCGAA GTGGAGCGCC AGATCGTGCG CTGGGTCCGG CAGCTGTTCG GCTTTCCGGA GACCGCCAGC GGGGTGTTCG TCACCGGCAC CTCGATGGCC AACCTGATGG CGGTGCTGGT GGCGCGCACC GCGACGCTCG GCACCGAGGT GCGGCAACGC GGGCTCGGCG AGGCCGGGCT CACCGCCTAC ACCTCGGTCG CGGCCCACGG CTGCATCGCC CAGGCGATGG ATCTCTCAGG TCTCGGCCGC GACGCGTTGC GCCGGATCGG CCAAGACGCC GCCCACCGCA TCGACGTCAC GGCGTTGCGG GCGCGGATCG CCGAGGACCG CGCCGCCGGG CGGGCGCCGT TCCTGGTGAT CGGCACCGCG GGCGCGGTCG ACACCGGCGC GATCGACGAC CTCGATGCGC TGGCTGAGCT CTGCCGCGGC GAGAAGCTGT GGTTTCACAT CGACGGCGCG TTCGGCGCAC TCGGCATGTT GTCGCCGCAG ATCGCGCCGC GGCTGAAGGG ACTTGAGCGC GCGGATTCCA TCGCGTTCGA TTTCCACAAA TGGGGCCAGG TGCAATACGA CGCCGGCTTC CTGATGGTGC GCGACGGCGA GCGGCATCGC GAGACCTTCG CGGCGCCGGT GGCCTATCTG CGCCGCGAAA CCCGTGGCCT CGCCGCCGGC TCGCCCTGGC CGTGCGACTA CGGCCCGGAT CTGTCGCGCG GCTTCCGTGC GCTGAAGACC TGGTTCACGC TGAAGACCTA CGGCACCGAC AAGCTCGGCG CGATGATCGA ACGCACCTGC GCGCTGGCGA AGTATCTGGA GCGCAAGATC GCCGCCGAGC CGCGGCTGGA ACTGCTGGCG CCGGTGGCGC TCAACATCGT CTGCTTCCGG TTCCGCGGCG ACGATCCGAA CCACCTCAAC GCCGAGATCG TCGCCGACCT GCACGAATCC GGCATCGTCG CGCCCTCGAC CACCACGATC CACGGCGCGC TGGCGATCAG GGCTGCGATC GTCAACCACC GCACCGACGT GCAGGATGTC GATGCGCTGA TCGAGGCGGT GCTGCGGTTC GGTGAGGCGC GGGTGAAGTA G
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Protein sequence | MSTTRREAAD ALGHSETLDP QDWEELRAQG HRMLDDMLDY IAKVRERPVW RPIPAAVRGQ FQQALPRAPS DLSDVYGEFS ELIAPYATGN VHPGFMGWVH GGGTPVGVLA EMLAAGLNAN CGGRNHMPIE VERQIVRWVR QLFGFPETAS GVFVTGTSMA NLMAVLVART ATLGTEVRQR GLGEAGLTAY TSVAAHGCIA QAMDLSGLGR DALRRIGQDA AHRIDVTALR ARIAEDRAAG RAPFLVIGTA GAVDTGAIDD LDALAELCRG EKLWFHIDGA FGALGMLSPQ IAPRLKGLER ADSIAFDFHK WGQVQYDAGF LMVRDGERHR ETFAAPVAYL RRETRGLAAG SPWPCDYGPD LSRGFRALKT WFTLKTYGTD KLGAMIERTC ALAKYLERKI AAEPRLELLA PVALNIVCFR FRGDDPNHLN AEIVADLHES GIVAPSTTTI HGALAIRAAI VNHRTDVQDV DALIEAVLRF GEARVK
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