Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4524 |
Symbol | |
ID | 3972073 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 5049706 |
End bp | 5050542 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637927635 |
Product | HAD family hydrolase |
Protein accession | YP_534365 |
Protein GI | 90425995 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1877] Trehalose-6-phosphatase |
TIGRFAM ID | [TIGR00685] trehalose-phosphatase [TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.278417 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCAAG ATCTCGCCCA AAAAGACCTC GCGCAGCAAG AGCCCGCCGC GCAGGCGCGT TCGCAGGACA ATGTCGACGC GCTGCGGTTC GATCCGGTGC CGTATTCGCT GCTGCCGCAG CTGTCGGACT GCGCGATCCT GCTCGACATC GACGGCACGC TGCTCGATCT TGCGCCGACG CCGCGCGAAG TCTGGGTTCC GCCGGGGCTC GAAGCGACGC TCACCGGGCT GAAAGCGCGC ACCGGCGGCG CGATGGCGCT GGTCAGCGGC CGCTCCCTGA ACGACATCGA TCTGATTTTT GCGCCGGTGC GGTTTCCCGC GGTCGGCGGC CACGGCGCCG AGATGCGGCT GACCGGGGAC GGCGATCTGG TGGCAGTGCA GGCGCCGCCG TTGGATAAGG ATCTCAAAGG CCGGCTCGCC GCGATCGCCA AGCTCAGCCC CGGCATTCTC CTGGAAGACA AGGGTTACTC GCTGGCGCTG CATTATCGGC TGGCGCCGCA TGCCGAGCAG GCGATCTACG AGGCGGTGGC GCTGATCCGT GCCGAACTGC CGAGCGCGCC GATCGAGGTG CTGCCCGGCA AATCGGTGTG CGAGATCAAA CACGCCGGTT TCACCAAGGC GACCGGCGTG CTGGAACTGA TGCAGCACGC CCCCTTCAAG GGCCGCCACC CGGTGTTCAT CGGCGACGAC GTCACCGACG AAACCGTGTT CAACATCATG CCCGATCTCG GCGGCCTGGC ATTCTCGGTC GGCCGCCACA GCCGCGGCGT CGCCGGGCAT TTCGAGCAGC CGCGCGACGT GCGGGCCTGG CTCGCCGGCC TGTTGGGAGC GTCATAG
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Protein sequence | MKQDLAQKDL AQQEPAAQAR SQDNVDALRF DPVPYSLLPQ LSDCAILLDI DGTLLDLAPT PREVWVPPGL EATLTGLKAR TGGAMALVSG RSLNDIDLIF APVRFPAVGG HGAEMRLTGD GDLVAVQAPP LDKDLKGRLA AIAKLSPGIL LEDKGYSLAL HYRLAPHAEQ AIYEAVALIR AELPSAPIEV LPGKSVCEIK HAGFTKATGV LELMQHAPFK GRHPVFIGDD VTDETVFNIM PDLGGLAFSV GRHSRGVAGH FEQPRDVRAW LAGLLGAS
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