Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4484 |
Symbol | |
ID | 3972496 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 4992339 |
End bp | 4994519 |
Gene Length | 2181 bp |
Protein Length | 726 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637927595 |
Product | TonB-dependent receptor |
Protein accession | YP_534326 |
Protein GI | 90425956 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4772] Outer membrane receptor for Fe3+-dicitrate |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.429644 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.265878 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGATCCG TCTCATCACG GCTGCGCCGC GCTCTGCTGG CATCCGCGGC CACGCTCGTC ACCGGCGCAG CGTCGGCGCA ATCAGCTTCA ACGTCGCTGC CAACCATCAC GGTGGAGTCC GCGGCGCCGC AGCGCACGGT CAGCGCGCGC AAACCGCGGC AAGTCACGGG CGGCGGCCGC TCGGCACGCC AAGTCACACC AGCGGCGCCG TCGCCCAATT CGGCGGGGCA GGGAACGCGC GCGCCTGGCT CTCTCACGGT TCCGACCGCG CAGCAGGCGC TGAAAGAAAT CGATCGGACT CCGGGCGCGG TCGCCGTGGT GCCCGATACG GCGTTCAAGA ACGGCCCGGC CAACACCGTG AAGGACATCC TCGGCTGGGT GCCGGGGGTG TTGATTCAGA CCCGATGGGG GCCAGACGGC CGGGTATCGA TCCGCGGCTC GGGTCTGTCC AGGAACTACG GCAATCGCGG CATCAACATC TTCATGGACG GTCTGCCGCT CAACACCTCG GACGGGCTGT TCGACCTGTT CGAGGTGGAT CCCAGCGTCT ATCGCTACGT CGAAGTGTTC AAGGGCGCCA ACGCGCTGCG CTATGGCGCC AATTCGCTCG GCGGCGCGAT CAATTTCGTG ATGCCGACGG GACGCGACGC GCCGGCGTTC GACGCGCGTG TCGATGGCGG CAGCTTCGGC TATGTCAAGA CCCAGAGCAG CATCGCCGGC GTCAATGGCC CGGCCGACTA TTTCATCACC GCCTCGGCGC AGCGCGAGGA CGGCTACCGC GAGCACAGCC GAACCGATAC CGAGCGGCTC AACGCCAATT TCGGCTATCA ATTTTCTCCC GATGCCGAGA CGCGGTTTTA TCTGAACGCC GGGCGGTGGC GGGCGGAGTT GCCGGGCGAA GTGACCAAGC AGGCGGCGCT GAACTCGCCG CGCGCCGCCG ACAGCGAATT CCTGCGGCAG GATCAGCAGC GCAATATCGA CACGGTCCGG ATCGCCAACA AGACCACGCT CAGGTTCGAC GACACCACCG TGGATCTCGG CGTCTTCGGC CTCGCCCGCC ACGTGATGCA TCCGATCTAT CAATGGCTGG ACTTCACCGC GCAAGACTAT GGCGGCTTCG TGCGCGCCAC CGACGAACGC TCGCTCGGCG GCTTGCGCAA CCGGCTGACC GCTGGCGTCA ACGTGCTCAA CGGCACCATT GATATCAACC AGTATCAAAA CCTCACCGGC GCGGTGAAGG GCGCGCTGGC GTCGTCCAAC CTGTGGAAAT CCGACAACGT GACCGCCTAT GCGGAGAACT CGCTCTATGT GCTGCCGAAC GTCGCCTTGA TCGCCGGCGC CCAGTTCCTC CACGCCTCGC GCGAACAGCA GGACCGTTTC CTGTCCGACG GCAATCAGTC CGGCACCCGA AACTGGGACC TGGTCAGTCC GAAGGTCGGC GTGCTGTGGG ACGTCGATCC GACATGGCAG GTGTACGGCA ACATCTCGCG CAACGCCGAG GTGCCGACCT TCGACGTCAA CAGCTTCTCG TCGCCAGCGA GTTCGAACGT CGAGGCGCAG ACCGGCACCA CCTACGAGAT CGGCACGCGC GGCCGCCGGC CGGACGTCAC CTGGGACCTG TCGGCGTATC GCACCGATCT GCGCAACGAG TTTCAGTGCC TGACCACGTC GCCGTTCAGT CCCTGCACCG TGGTCAATGC CGACCGCACC GTGCATCAGG GCGTCGAAGC CGGCCTCGGC GTGGCGTTGC TGAAATCCAG TTTCGCGCAG GATGACCGCT TCTGGTTCAA CGTCGCCTAC ACCTACAGCG ACTTCCGCTT CGACCGCGAC GCGACCTGGG GCAACAACCG GCTGCCGGGT CTGCCGCCGC ACTACCTCCG CGCGGAAATT CTCTACAAGC ATCAGAACGG CTTCTATGCC GGCCCGAACG TCGAATGGAT GCCGCAGGCG TTCTTCGCCG ACAACGCCAA CAGCCTGACC ATCGACCCCT ACGCGCTGTT GAACTTCAAG GTCGGCTACG ACCACGGCAT CGGCTGGTCG GGCTATGTCG AAGGGCGGAA CCTGCTCGAC ACCCGCTACA TCTCCAGCAC CATCACCGCC GGCGTGGCGA CGGCGACGTC GGCGTTGTTC AACCCAGGCA TGGGGCGCGC GATCTATGGC GGCATCCGCT ATCGGATGTG A
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Protein sequence | MRSVSSRLRR ALLASAATLV TGAASAQSAS TSLPTITVES AAPQRTVSAR KPRQVTGGGR SARQVTPAAP SPNSAGQGTR APGSLTVPTA QQALKEIDRT PGAVAVVPDT AFKNGPANTV KDILGWVPGV LIQTRWGPDG RVSIRGSGLS RNYGNRGINI FMDGLPLNTS DGLFDLFEVD PSVYRYVEVF KGANALRYGA NSLGGAINFV MPTGRDAPAF DARVDGGSFG YVKTQSSIAG VNGPADYFIT ASAQREDGYR EHSRTDTERL NANFGYQFSP DAETRFYLNA GRWRAELPGE VTKQAALNSP RAADSEFLRQ DQQRNIDTVR IANKTTLRFD DTTVDLGVFG LARHVMHPIY QWLDFTAQDY GGFVRATDER SLGGLRNRLT AGVNVLNGTI DINQYQNLTG AVKGALASSN LWKSDNVTAY AENSLYVLPN VALIAGAQFL HASREQQDRF LSDGNQSGTR NWDLVSPKVG VLWDVDPTWQ VYGNISRNAE VPTFDVNSFS SPASSNVEAQ TGTTYEIGTR GRRPDVTWDL SAYRTDLRNE FQCLTTSPFS PCTVVNADRT VHQGVEAGLG VALLKSSFAQ DDRFWFNVAY TYSDFRFDRD ATWGNNRLPG LPPHYLRAEI LYKHQNGFYA GPNVEWMPQA FFADNANSLT IDPYALLNFK VGYDHGIGWS GYVEGRNLLD TRYISSTITA GVATATSALF NPGMGRAIYG GIRYRM
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