| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4400 |
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| Symbol | |
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| ID | 3970415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4904496 |
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| End bp | 4905443 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637927509 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_534242 |
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| Protein GI | 90425872 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.478919 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.223671 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGTCCA GGTTGCTCGG CGTCGCGATT GCGGCCGCCT GTGTTCTGTC GGCGCCGCAG
GCCCGCGCCC AACAATTCAT CAATATCCTG ACCGGCGGCA CCTCCGGGGT GTACTACCCG
CTCGGCGTCG CGATGGGCAA AATCTACGGC GACAAGATTC CGGGCGTGAA GACCCAGGTG
CAGGCCACCA AGGCCTCGGT GGAAAATCTG GTGCTGCTGC AGCGCGGCAG CGGCGAGATC
GCGTTCTCGC TCGGCGACTC GCTGAAGGCG GCGTGGGAAG GCGACGAGGA GGCCGGCTTC
AAGAGCAAGC TCGACAAGCT GCGGGTGATC GGCGCGATCT ATCCGAACTA CATCCAGATC
GTCGCCACCG CCGAGAGCGG CATCAAGACG CTGGCCGATC TGAAGGGCAA GAGCCTGTCG
GTCGGGGCGC CGAAATCCGG CACCGAGCTG AACTCCCGCG CGATCCTGAA GGCCGCCGGG
ATGGACTACA AGGACATCGG CAAGGTCGAG TACCTGCCGT TCGCCGAATC CGTCGACCTG
ATGAAGAACC GCCAGCTCAC CGCGACGCTG CAGTCCGCCG GCCTCGGCGT CGCCTCGCTG
AAGGATCTGA GCAATTCCAG CGAGATCACC GTGGTGTCGG TGCCCAAGGA GGTGGTCGAC
AAGATCGGCC CGCCGTTCGT GGCGGCGACC ATTCCGTCCG GCACCTACAA GGGCCAGGAC
AAGGACGTGC CGACCGCGGC GGTGATCAAC TACCTGGTGA CCAGTTCGGC GGTATCGGAC
GACGTCGCGT ATCAGATGAC CAAGCTGATC TTCGACAATC TGCCCGAACT CGCCAACGCC
CACGCTGCCG GCCGCGAGAT CAAGCTCGAA GGCGCCGCCA CCGGCAGCCC GGTGCCGCTG
CATCCCGGCG CGATCCGCTA CTACAAGGAA AAGGGATTGA TTAAGTAA
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| Protein sequence | MKSRLLGVAI AAACVLSAPQ ARAQQFINIL TGGTSGVYYP LGVAMGKIYG DKIPGVKTQV
QATKASVENL VLLQRGSGEI AFSLGDSLKA AWEGDEEAGF KSKLDKLRVI GAIYPNYIQI
VATAESGIKT LADLKGKSLS VGAPKSGTEL NSRAILKAAG MDYKDIGKVE YLPFAESVDL
MKNRQLTATL QSAGLGVASL KDLSNSSEIT VVSVPKEVVD KIGPPFVAAT IPSGTYKGQD
KDVPTAAVIN YLVTSSAVSD DVAYQMTKLI FDNLPELANA HAAGREIKLE GAATGSPVPL
HPGAIRYYKE KGLIK
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