| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4268 |
|---|
| Symbol | |
|---|
| ID | 3971691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 4752962 |
|---|
| End bp | 4753771 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637927372 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_534111 |
|---|
| Protein GI | 90425741 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.52559 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.660743 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGTCG CCGGCAAAAT CGTGGTCGTG ACCGGAGGCG CCAATGGTAT CGGCCAGGCG
CTGTGCGAGG CGTCGCATCG CGCCGGCGCC GCCAAGGTGG TCGTCTCCGA TCTGGATCTG
GCGCGCGCCG AACAGGTCGC CGCTTCGATC GATGGCGCGG CGTTCAAATG CGACGTCGGC
CGGGAGGCTG ACATCGCGCA TCTGATCGGC GAGACCGAGC GGCAATTCGG GCCGATTGCG
CTGTTCTGCT CCAACGCCGG AATCGGCGGC GGTTTTGATC CATTGTCGGA GAATGCCGGC
GGTGCCTCCG ACGAGCCGTG GGAGAAGAGC TGGGCGATCC ATGTGATGGC GCACGTCCAT
GCCGCGCGGC ATCTGATCCC GCTCTACAAG GCGCGCGGCG GCGGCTATTT CCTCAACACC
ATTTCGGCGG CGGGTCTGTT GTCGCAGGTC GGCAGCCCGG CCTATTCCAC TACCAAGCAC
GCCGCGGTCG GCTTCGCCGA AAACCTCGCG ATCTCGCATC GCGCCGACGG CATCAAGGTG
TCGATCCTGT GCCCGCAGGG CGTCGATACC AACATGCTGC GCGCGATCCC CAAGGGCCCG
CAATCCGGCG ACGGCGATCT GTCGCCGGAG GAAGTGGCTC GGGTTGCGCT GGAGGGCGTC
GCCGAGGAGC GCTTCCTGAT CCTGCCGCAT CCACAGGTGC TGGGCTATAT GCGCGCCAAG
ACCGAGAACT ACGATCGCTG GCTCGGCGGC ATGGCCAAGA TCCAAGCCAA GATGCGCGAC
GCCTATCGGG CGACGGCGAA GGCGGGGTGA
|
|---|
| Protein sequence | MQVAGKIVVV TGGANGIGQA LCEASHRAGA AKVVVSDLDL ARAEQVAASI DGAAFKCDVG
READIAHLIG ETERQFGPIA LFCSNAGIGG GFDPLSENAG GASDEPWEKS WAIHVMAHVH
AARHLIPLYK ARGGGYFLNT ISAAGLLSQV GSPAYSTTKH AAVGFAENLA ISHRADGIKV
SILCPQGVDT NMLRAIPKGP QSGDGDLSPE EVARVALEGV AEERFLILPH PQVLGYMRAK
TENYDRWLGG MAKIQAKMRD AYRATAKAG
|
|---|
| |