| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4174 |
|---|
| Symbol | |
|---|
| ID | 3972317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 4637148 |
|---|
| End bp | 4638425 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637927277 |
|---|
| Product | diguanylate phosphodiesterase |
|---|
| Protein accession | YP_534018 |
|---|
| Protein GI | 90425648 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.886993 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAATG ACCTGAGCGA ATGTGATCAG ACTCTTCCGC TGTTGTTCGC TGCGGTCAAA
CGCGAAGGCG ACGCCAGCGA CCGCATCCGC CGCGCGTTGC AGGCGGTGCG CAGCCATCTC
GGCCTGCAAG TCGCCTACGT CTCCAGGTTC GAGGGCGAGC GCTCGGTGTT CCGCGTCGTC
GATGCGCCCG GCCTCGAGCA CGTCATCAAG CCCGGCGACA GCCGCCCGCT CGACGAAATC
TACTGCCGGC ACATATTGCA AGGCCGGCTG CCGCAACTGA TTCCCGACAC CTCCGCCGAA
CCGCTGGCGA TGGCGATGCC GATCACCGCC GAATGCCAGA TCGGCAGCCA TCTCAGCGTC
CCGATCGAGC TGCCGAACGG CGAGACCTAC GGCATGTTCT GCTGCATCGG CTTTCAGGCC
GATTGCTCGC TGAACGAGCG CGACCTCGCG ACCATGAAGG CGTTCGCCGA GATCGCCTCG
TTCGAGATCG GCTGTGAGTT GGAGGCGCAA CGCGAGCTGC GCGCAAAACA AACCCTTGTC
GGCCAAGTGA TCGACGAGGA TCTGATGTCG ATCGTGTACC AGCCGGTCTG GGACATCGAG
GCGATGCAGC CGCTCGGCTT CGAATGCCTG GCACGGTTCT CGCCGTTGCC GCTGCGCTCA
CCGGACAAAT GGTTCGCAGA CGCGGCCGAG GTCGGCATGG GCGTCGAACT CGAACTGCAC
GCCATCCGCA AGGCGTTGCA GGCGATCGGC CGCTTTCCGG CGCCGATCGA CCTCAGCGTC
AACGCTTCGG CGGCGACCAT CCTCGGCGGC GATCTCGCGC GGCTGTTCGA CGGCGTGCCG
CTCGATCGGT TGATCGTCGA GATCACCGAG CATTCCAGCG TCGGCAACTA CGACGCCATC
CTCGACGTGC TGCGGCCACT GCGCCAGCGC GGCTTGCGGC TCGCGGTCGA CGACGCCGGC
GCTGGCTATT CCAGCCTGCA CCATATCCTC AACATGCAGC CGGACTTCAT CAAGCTCGAT
ATCGGGCTGA CCCAGAACAT CGACCTCGAC CCGGCGCGCA AGGCGCTGGC CCGTGCGCTG
GTCGGCTTCG CCCGCGACAC CGGCAGCCGG ATCGTCGCCG AAGGCGTCGA GCGTCAATCC
GAACTCGATG CGTTGCGCTC GATCGGGGTG AAGAAGGTCC AGGGCTATCT GCTCGGCCGT
CCGATGTCGC TGCAGGATGC GGTCGCGCTC TGCCCAACCC GCCGCCGACG CAAGACCCCG
CTCCGCCTCA GCGCCTGA
|
|---|
| Protein sequence | MRNDLSECDQ TLPLLFAAVK REGDASDRIR RALQAVRSHL GLQVAYVSRF EGERSVFRVV
DAPGLEHVIK PGDSRPLDEI YCRHILQGRL PQLIPDTSAE PLAMAMPITA ECQIGSHLSV
PIELPNGETY GMFCCIGFQA DCSLNERDLA TMKAFAEIAS FEIGCELEAQ RELRAKQTLV
GQVIDEDLMS IVYQPVWDIE AMQPLGFECL ARFSPLPLRS PDKWFADAAE VGMGVELELH
AIRKALQAIG RFPAPIDLSV NASAATILGG DLARLFDGVP LDRLIVEITE HSSVGNYDAI
LDVLRPLRQR GLRLAVDDAG AGYSSLHHIL NMQPDFIKLD IGLTQNIDLD PARKALARAL
VGFARDTGSR IVAEGVERQS ELDALRSIGV KKVQGYLLGR PMSLQDAVAL CPTRRRRKTP
LRLSA
|
|---|
| |