Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4106 |
Symbol | |
ID | 3973156 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 4567266 |
End bp | 4568855 |
Gene Length | 1590 bp |
Protein Length | 529 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637927210 |
Product | D-3-phosphoglycerate dehydrogenase |
Protein accession | YP_533951 |
Protein GI | 90425581 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.885327 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCAC CCAAAGTTTT GATTTCAGAC GCCCTGTCCC CCGCTGCCGT GCAGATCTTC AAGGATCGCG GCATCGACGT CGACTTCCAG CCGGCGCTCG GCAAGGACAA AGAGAAGCTC GCCGAGATCA TCGGCAATTA TGATGGCCTG GCGATCCGCT CGGCCACCAA GGCCACCGCG AAGATCCTCG AGAAGGCCAC CCGCCTCAAG GTGATCGGCC GCGCCGGCAT CGGCGTTGAT AACGTCGAGA TCCCCGCCGC CACCGCCCGC GGCATCATCG TGATGAACAC GCCGTTCGGC AATTCGATCA CCACCGCCGA GCACGCGATT ACGTTGATGT TGTCGCTGGC CCGCGAAATC CCGGCGGCCG ATGCTTCGAC CCAGGCCGGC AAGTGGGAGA AGAACCGCTT CATGGGCGTC GAGATCACCG CCAAGACGCT CGGCGTGATC GGCTGCGGCA ACATCGGCTC GATCGTCGCC GACCGCGCGC TCGGCCTGAA GATGAAGGTG ATCGCGTTCG ACCCGTTCCT GTCGCCGGAG CGCGCCAAGG ACCTCGGCGT CGAGAAGGTC GAGCTCGAAG ACCTGTTCAA GCGCGCCGAC TTCATCACGC TGCACACCCC GCTCACCGAC AAGACCCGCA ACATCATCGA CGCCGCTGCA ATCGCCAAAA TGAAGAAGGG CGTGCGGATC ATCAACTGCG CCCGCGGCGG TCTGGTCGAC GAGCAGGCGC TGGTCGATGC GTTGAACTCC AAGCAGGTTG CCGGCGCCGC CTTCGACGTG TTCGTCGAGG AGCCGGCCAC CAAGAACGTG CTGTTCGGCC ACGCCAACGT GATCTGCACC CCGCATCTCG GCGCTTCCAC CACCGAAGCC CAGGAGAACG TCGCGCTGCA GGTCGCCGAG CAAATGTCGG ACTACCTGTT GACCGGCGCG ATCTCCAACG CGGTCAACTT CCCCTCGATC ACCGCGGAAG AAGCCCCGAA GCTGAAGCCG TTCATCGAGC TCGCCGAAAA GCTCGGCTCG TTCGCCGGCC AATTGACCGA AAGCGGCATC TCCAAGGTGA CCATCACCTA TGAGGGCGCG GTCGCCGAAA TGAAGATCAA GGCTTTGACC TCGGCGGCGC TCTCCGGCCT GCTGCGGCCG ATGCTCGGCG ACGTCAACGT GGTGTCGGCG CCGGTCGTCG CCAAGGAGCG CGGCATGGTG GTCGACGAGG TGGTTCGCGC CGCCGAGAGC GACTACGAGA GCCTGATCAC CGTCACCGTC ACCACCGCCG ACATGAAGCG TTCGGTGTCC GGCACGGTGT TCGCCGACGG CCATCCGCGC CTGGTCGACA TCAAGGGCAT CCGGGTCGAC GCCGAATTCG GCAAGTCGAT GATCTACGTC ACCAACGAGG ACAAGCCGGG CTTCATCGGC AAGTTCGCGA GCCTCTTGGG CGACGCCAAG ATCAACATCG CCACCTTCAA TCTCGGCCGT CACGAACTGG GCGGCGACGC CATCGCGCTG GTCGAAGTCG ACGGCGCGGT GCCGGCCGAG GTGATCGCCA AGGTGCAGGC GCTGCCGCAG GTCAAGCAGG CCAAAGCGCT GGTGTTCTAA
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Protein sequence | MTAPKVLISD ALSPAAVQIF KDRGIDVDFQ PALGKDKEKL AEIIGNYDGL AIRSATKATA KILEKATRLK VIGRAGIGVD NVEIPAATAR GIIVMNTPFG NSITTAEHAI TLMLSLAREI PAADASTQAG KWEKNRFMGV EITAKTLGVI GCGNIGSIVA DRALGLKMKV IAFDPFLSPE RAKDLGVEKV ELEDLFKRAD FITLHTPLTD KTRNIIDAAA IAKMKKGVRI INCARGGLVD EQALVDALNS KQVAGAAFDV FVEEPATKNV LFGHANVICT PHLGASTTEA QENVALQVAE QMSDYLLTGA ISNAVNFPSI TAEEAPKLKP FIELAEKLGS FAGQLTESGI SKVTITYEGA VAEMKIKALT SAALSGLLRP MLGDVNVVSA PVVAKERGMV VDEVVRAAES DYESLITVTV TTADMKRSVS GTVFADGHPR LVDIKGIRVD AEFGKSMIYV TNEDKPGFIG KFASLLGDAK INIATFNLGR HELGGDAIAL VEVDGAVPAE VIAKVQALPQ VKQAKALVF
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