| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4078 |
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| Symbol | ispH |
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| ID | 3973359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4531314 |
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| End bp | 4532276 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637927182 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
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| Protein accession | YP_533923 |
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| Protein GI | 90425553 |
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| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0293628 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.777612 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAGTCTA AACCGCCCCT GAAAATCCTG CTTTGCTCGC CGCGCGGGTT CTGCGCCGGC
GTGGTGCGGG CGATCGACAC CGTGGAACGG GCGCTGGCGT TGTATGGCGC CCCGGTCTAT
GTCCGCCACG AAATCGTGCA CAACCGCTAC GTCGTCGACA GCCTGCGCGC CAAGGGCGCG
ATCTTCGTCG AGGAACTGGC GGAAATCCCC AACACCCAGG CCCCGGTGGT GTTTTCCGCC
CATGGCGTGC CGAAATCGGT TCCCGCCGAA TCGCTGCAGC GCAATTTCTT CTCGCTCGAC
GCCACCTGTC CCTTGGTCAC CAAGGTGCAC CGCGAGGCGG CAATCCATTT CAAGCGCGGT
CGCGAGATTC TGCTGATCGG GCATTCGCAC CATCCGGAAG TGGTCGGCAC GCTCGGCCAG
TTGCCGGCCG GCGCGGTGTC GCTGATCGAA ACCGCGGCGG ACGCCGCTGC CTATCAGCCG
AAGGACCCCG ACAACCTGGC TTTCGTCACC CAGACCACGC TGTCGATCGA CGACACCGCG
GGCATCGTGG CGATCCTGCG CGAGCGTTTT CCCAACATCT CCGGGCCGCA CAAGGAAGAC
ATCTGCTACG CCACCACCAA CCGCCAGGCG GCGGTGAAGA AGGTGGCGCC GATCGTCGAC
GCCATGATCG TGGTCGGCGC GCCGAATTCC TCGAATTCGC AGCGCCTGCG CGAGGTCGCC
GAGCGCGAAG GCTGCAAGAT CGCGGTTTTG GCGCAGCGCG CCGACGACAT CGACTGGACG
CTGTTCCAGG GCATCACCAG CCTCGGCCTC ACCGCCGGGG CCTCCGCCCC CGAGGTCATC
GTCGAGGAGA TCATGGGCGC GTTCGCCGAA CATTACGAAC TGCGCGTCGA GACGGTGTCG
GCTGCGGAAG AGAACGAGTT CTTCCCGCTG CCGCGCGCGC TGCGGCCCGA CGCGGCCGAG
TAG
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| Protein sequence | MQSKPPLKIL LCSPRGFCAG VVRAIDTVER ALALYGAPVY VRHEIVHNRY VVDSLRAKGA
IFVEELAEIP NTQAPVVFSA HGVPKSVPAE SLQRNFFSLD ATCPLVTKVH REAAIHFKRG
REILLIGHSH HPEVVGTLGQ LPAGAVSLIE TAADAAAYQP KDPDNLAFVT QTTLSIDDTA
GIVAILRERF PNISGPHKED ICYATTNRQA AVKKVAPIVD AMIVVGAPNS SNSQRLREVA
EREGCKIAVL AQRADDIDWT LFQGITSLGL TAGASAPEVI VEEIMGAFAE HYELRVETVS
AAEENEFFPL PRALRPDAAE
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