| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3955 |
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| Symbol | |
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| ID | 3969242 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4407464 |
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| End bp | 4410151 |
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| Gene Length | 2688 bp |
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| Protein Length | 895 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637927059 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_533800 |
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| Protein GI | 90425430 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGGCA ACAATTGGCA AGTCGGTGGC GTAACTAAAC TTGCTGTGTC GGTTGTAGGT
TGCCTCGTTG CCACCGCTGC GACCAGCGGT GCGGCGAGGG CGGGGTTCGA ATTGGCTCCG
ACGCGCTACC TCGGGTCGTT TGACGCCGAG ATCCTCTGGG AATTGCTGAT CGGCGGCTTC
GTCGCGGTCT CGTTTCTGGC CTCCGTGGCG ATCTGGGCGA TGTCCAGCCT GCGCCGGATC
AGCCGCGCGC ATCATCGCCG CGGCCTGTTC GTCAGCTCTG CCCTGAATAG TTTGAATCAG
GGCGTGGTGA TGGTCGACGC GCTCGGCAAG GTGATGTTCT GCAACGACCG TTACCTGGAA
ATCTACGGGT TGAGGCGCTC GGATATTGTT CCCAACATGA CCGGCCTCGA ATTGCTCGAG
CTGCGCCGCA GCCGCGGCAT GCTGGATGTC GCCACCGAGG AGTTCTACCG CACCGCCTCC
GGTCCCAATG GGCATATCGC CGATCTGCCC AACGGGCGAT CGGTGCTGGT GAAGTTCTCC
AACCTCGCCA ATGGCGGCTC GATCGCGACC CACGACGATT GCACCCCGCA ACGCGAACTG
TCCCGGCAGC TGGCGACCGC CAAACAGTTC CTGGAATCGG TGATCGACAA CATCCCGGTC
TGCGTCGCCG CCAAGGCGAT CGAAGACGGC CGCTACATCC TGGCCAACCG CGCCTTCGAA
CGGTTCTGCG GGTTGCCGCG CGATCGCATC CTCGGCAGGC GCACCGCCGA ACTGTTTTCC
GCGGCGACGG CGGCCACCAT CGGCGAAGCC GACCGCATGG CGATCGATTC GCCGCACGAT
CCGCTGCGGG GCGAATTGAC GGTCGACGTC GGCGGCGGCG ACCGCGTCAT CGACAACAAC
TGCGTGGTGG CGTGCGACGA CAAGAACCGG CCGGAATTTC TGATCGCGCT GTTCGAGGAC
ATCACCGAGC GGCGGTCGCT GTCGCAGGAG CTCGTCAACA CCAAGAAATT CCTTGAGCTG
GTGGTCGACA ATATTCCGAT CTCGCTGACC GTGCAGAGCA CGCAGGACGG GCGATACCTG
TTCGCCAATC GCGGCGCCGA GGCCATCCTC AACCGCTGCC GCGAGGACGC CGTCGGGCTG
TCGGCCTTGG ATATCTTCAA TCCCAAGGAA GCCAAACTGA TCGCCGAGCG CGACGCCAAT
GCGATCCGCC GCCGCGATCT GATGACCGAG GAGCACCCGA TCAGCACCAA GGACGGGCTG
CGGCTGTTCC TGACCCGCCG CGTCACCGTG GTCGACGGCG AGGGCGCGCC GCAATACCTG
ATCAAGACCC ATGAGGACAT CACCGACCGG CGGCAGACCG AAGCACAGAT GGCGCATATG
GCCTACCATG ACGGGCTGAC CGACCTGCCG AACCGGCTGG CGTTCCTGCA AGCGCTGGCG
CAGATGATCG AGGCTTGCCG CGATACCACC GAAGAGTTCG CGGTGCTGTC GGTCGATCTC
GACGGGCTGA AGGAAATCAA CGACGTGTTC GGTCACGCCG TCGGCGACAA GCTGTTGGTC
GAGGTGGCGC GCTGCATCCA GCTGTCGTCG CGCGGCGGCG TGGTGTCCCG CCTCAGCGGC
GACGAGTTCG GGTTGATCAT CGACGGCCCG CAGCCGGCCG CGGCGATGCA TCTCGCCGCA
GAGGTTGCCA AAGCGGTGGC CGGAGGGTTC CTGATCGACG GCAAGCAGGT CCGGATCGGC
GTCACCACCG GCGTCGCGGT GTTCCCGGCC AATGGCGCCG ATGCGGCCTC GCTGCTCGCC
AATGCCGGCG CGGCGCTGTT CCGCGCCAAG GCGCGGATGC GCGGCTCGGT CAGCCTGTAC
GAACCGGAGA TGGATCGGCA GATCCGCGAC CGCCGCATCC TGCACCAGGA CCTCTCCGCC
GCGATCAAGA ACGGCGAGAT GTCGCTGCAC TACCAGCCGC AGGCCAACGG ATGCACCCGG
ATCGGCGGCG ACGATTTCGT CGGCTTCGAG GCGCTGGCGC GCTGGTTCCA TCCGACCCGC
GGCTTCGTGC CGCCGAGCGA CTTCATTCCG CTCGCCGAAG AGAGCGGGCT GATCGTCGAG
ATGGGCGAAT GGATTTTGCG CGAGGCCTGC CGCGAGGCGG CGTCCTGGAG CAAACCGCTG
CAGATCGCCG TCAATCTATC GCCGGCCCAG TTCCTCAACA GCGACCTGGT GAGCGCGGTG
CACACCATCC TGCTGGAAAC CGGGCTGAAG CCGAGCCGGC TCGAACTGGA AATCACCGAA
GGCGTGCTGA TCGAGGATTT CGACCGCGGC TTGTCGCTGC TGCGCCGCCT GACCGCGCTC
GGTGTGCGGA TCTCGATGGA CGATTTCGGC TCCGGCTATT CGTCGCTGAC CTATCTGCAG
GCGTTCCCGT TCGACAAGAT CAAGATCGAC CGCGCCTTCG TGATGAACCT CGGGCACAAT
CCGCAATCCG CCGCGATCGT CCGCGCGGTG ATCGGACTCG GCCACGGGCT CGGCGTGTCG
ATCGTCGCCG AGGGCGTCGA AACCCAGCAG CAGCTCGACT TCCTGGTCGC CGAAGGCTGC
GACGCGGTGC AGGGCTATTT CATCGGCAAG CCGGCGCCGA TCGAACAATA CTCCCGGCTG
GTCGGCCTCA CCGGCCCGCG TCTGGCGACC TCGCGCGCCG TCGGCTGA
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| Protein sequence | MAGNNWQVGG VTKLAVSVVG CLVATAATSG AARAGFELAP TRYLGSFDAE ILWELLIGGF
VAVSFLASVA IWAMSSLRRI SRAHHRRGLF VSSALNSLNQ GVVMVDALGK VMFCNDRYLE
IYGLRRSDIV PNMTGLELLE LRRSRGMLDV ATEEFYRTAS GPNGHIADLP NGRSVLVKFS
NLANGGSIAT HDDCTPQREL SRQLATAKQF LESVIDNIPV CVAAKAIEDG RYILANRAFE
RFCGLPRDRI LGRRTAELFS AATAATIGEA DRMAIDSPHD PLRGELTVDV GGGDRVIDNN
CVVACDDKNR PEFLIALFED ITERRSLSQE LVNTKKFLEL VVDNIPISLT VQSTQDGRYL
FANRGAEAIL NRCREDAVGL SALDIFNPKE AKLIAERDAN AIRRRDLMTE EHPISTKDGL
RLFLTRRVTV VDGEGAPQYL IKTHEDITDR RQTEAQMAHM AYHDGLTDLP NRLAFLQALA
QMIEACRDTT EEFAVLSVDL DGLKEINDVF GHAVGDKLLV EVARCIQLSS RGGVVSRLSG
DEFGLIIDGP QPAAAMHLAA EVAKAVAGGF LIDGKQVRIG VTTGVAVFPA NGADAASLLA
NAGAALFRAK ARMRGSVSLY EPEMDRQIRD RRILHQDLSA AIKNGEMSLH YQPQANGCTR
IGGDDFVGFE ALARWFHPTR GFVPPSDFIP LAEESGLIVE MGEWILREAC REAASWSKPL
QIAVNLSPAQ FLNSDLVSAV HTILLETGLK PSRLELEITE GVLIEDFDRG LSLLRRLTAL
GVRISMDDFG SGYSSLTYLQ AFPFDKIKID RAFVMNLGHN PQSAAIVRAV IGLGHGLGVS
IVAEGVETQQ QLDFLVAEGC DAVQGYFIGK PAPIEQYSRL VGLTGPRLAT SRAVG
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