| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3828 |
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| Symbol | |
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| ID | 3969287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4258151 |
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| End bp | 4259443 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637926938 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_533681 |
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| Protein GI | 90425311 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATGA CCACGGACAA GCCCAGGGAG CCGACCGAGA CCACGCCCCC TGCTGTGCCC
GCCCGATCCA GGCTGTCGCG CGCCCTGGCC GCATCCTGGC AGCACAAATG GTCGGTGGCC
GCGCTAGTTC TGCTGTTCGG AGCCGCGGTG CTCGGCGCGT TGCGGTTGAT CCTCGGTCCC
GAAGTGGTGG TGGCGCAGGT GCTGCGCGGC AACCTGGTAC AGACCGTGGT GGCGAGCGGC
CATATCGAAA CGCCGTATCG GGTGGAAATC GCCAGCCAGA TCACCGGCAC CGTCGAGGAC
GTGCTGGTGC AGGAGGGCGA GCAGGTCCAG CAGGGCCAGA AGCTGGTGGT GATCGAAGCC
AGCGAATTGC AGGCCGCGGT GGTGCAGACC GAGGGCGCGG TGGCGCAGGC CGAGGCGCGG
GTGCGGCAGT TGCGCGAATT GACCAAGCCC GCCGCCGACC AGGCGCTGAT GCAGGCGCAG
GCCAATCTGC TCAACGCGCA AGCCGCCTAT GATCGGGCGT CGAAGCTCGC CGGCTCGGGC
TACGGCACCC GCGCCACGCT CGACGACGCC ACCAAAAATC TCGACGTCGC CCGCACCCAG
GTGCGCACCG CCGAGCTGCA GGTGTTCACC TCGAGCCCGG TCGGCAGCGA CTATGTGATG
GCGGAAACCC AGCTCGCGCA GGCCCGCGCC AATCTCAACA CCGCGCGCGC GCGGCTCAAT
TACGCGACGA TTGTCGCGCC GCGCGATGGC GTGCTGATCA CCCGCAATGT CGAGCGCGGC
ATGGTGGCGC AACCCGGCAA GGCGATGCTG GTGCTGGCGC CGAAGGGCGA CATCCAGGTC
GTGGTGCAGA TCGACGAGAA GAACCTCGGG CTGTTGACGC TCGGGCAAAC GGCGCTGGCC
TCGGCCGACG CCTATCCCGA CCAGCGCTTT GTCGCGGTGA TCAGCTACAT CAATCCGTCG
GTCGACATCA ACCGCGCCTC GGTGCAGATC AAGCTGTTGG TGCGGGATCC GCCGGACTAT
CTGCGGCAGG ACATGACGGT GTCGGTCGAC GTCGAGATCG CCCGGCGCGA TGACGCGATC
GTGGTGCCGG CGCGCGCGGT GCACGATCCG GCCACCGCGA CGCCATGGGT GCTGAAGGCC
AAGCTCGGCC GTGCCTTGCG GCAGCCGATC AAGCTCGGGC TGCGCGGCAC TGGGCACTTC
GAAGTGCTGG GCGGCTTGCA GCCCGGCGAT CTGGTGGTGC CGCTGACGTC TGGCGTGAAG
GCCGGGCAGC GGCTGCGGGC CGTGCTGCCA TGA
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| Protein sequence | MDMTTDKPRE PTETTPPAVP ARSRLSRALA ASWQHKWSVA ALVLLFGAAV LGALRLILGP
EVVVAQVLRG NLVQTVVASG HIETPYRVEI ASQITGTVED VLVQEGEQVQ QGQKLVVIEA
SELQAAVVQT EGAVAQAEAR VRQLRELTKP AADQALMQAQ ANLLNAQAAY DRASKLAGSG
YGTRATLDDA TKNLDVARTQ VRTAELQVFT SSPVGSDYVM AETQLAQARA NLNTARARLN
YATIVAPRDG VLITRNVERG MVAQPGKAML VLAPKGDIQV VVQIDEKNLG LLTLGQTALA
SADAYPDQRF VAVISYINPS VDINRASVQI KLLVRDPPDY LRQDMTVSVD VEIARRDDAI
VVPARAVHDP ATATPWVLKA KLGRALRQPI KLGLRGTGHF EVLGGLQPGD LVVPLTSGVK
AGQRLRAVLP
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