| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3675 |
|---|
| Symbol | |
|---|
| ID | 3969612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 4089487 |
|---|
| End bp | 4090299 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637926785 |
|---|
| Product | Cof protein |
|---|
| Protein accession | YP_533529 |
|---|
| Protein GI | 90425159 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0561] Predicted hydrolases of the HAD superfamily |
|---|
| TIGRFAM ID | [TIGR00099] Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGCA TCGCTCTCGT CATCTCCGAC GTCGACGGCA CCTTGGTGAC CAAGGACAAG
CGGCTGACCG AGGCCGCGCA GAAAGCGGTC GCGCGACTGC GCGGCGCCGG CATCGGCTTC
ACCGTGACCA GCAGCCGGCC GCCGGTCGGG ATGCGGATGT TGGTCGACCC GCTCGGCCTC
GACCTGCCGA TGGGGCCGTT CAACGGCTCC TCGATCGTCG ATCCGCAATT CGCCGTGCTG
GAGCAGCATC GGATTCCGGC GACGGCGGCC GCGATCAGCC TCAAGGTGCT CGCCGAGTTC
GCGATCGACG CCTGGCTGTT CACCACCGAT CACTGGTTCG TCGATCGGCT GGACGGCGAC
TACGTCGCGC ATGAGCAAGG CACCATCCAG GCCGATCCGA CCGCGGTCGA CGATTTTTCG
CCGTATCTCG ACCAGGCCTG CAAGATCGTC GGCTCCACCA CCGACGCAGC CTTGCTGGCG
CGTTGCGAGC AGGCGATGCA ACAGGCGCTC GGCACGCAAG CCTTGGCGGT GCGCTCGCAG
AGCTACTATC TCGACATCAC CCCGCCCGGC CAGGACAAGG GCAGCTTCGT CCGCGCGATG
GCGCGGCGGC TCGGCATCAC CACCGATGCC ATCGCCACCA TCGGCGACAT GCAGAACGAT
CTGGCGATGT TCAAGACCAG CGGGCTGCCG ATCGCGATGG GCAACGCCAC CCCTGACGTG
CAACGCCAGG CCCGCCACGT CACCGCCTCG AACGAGGACG ACGGTTTTGC CGCGGCGGTC
GAGTTCATCC TGAAGCAGCA GGCCGCGAGC TGA
|
|---|
| Protein sequence | MSRIALVISD VDGTLVTKDK RLTEAAQKAV ARLRGAGIGF TVTSSRPPVG MRMLVDPLGL
DLPMGPFNGS SIVDPQFAVL EQHRIPATAA AISLKVLAEF AIDAWLFTTD HWFVDRLDGD
YVAHEQGTIQ ADPTAVDDFS PYLDQACKIV GSTTDAALLA RCEQAMQQAL GTQALAVRSQ
SYYLDITPPG QDKGSFVRAM ARRLGITTDA IATIGDMQND LAMFKTSGLP IAMGNATPDV
QRQARHVTAS NEDDGFAAAV EFILKQQAAS
|
|---|
| |