Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3578 |
Symbol | |
ID | 3972817 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 3980292 |
End bp | 3981368 |
Gene Length | 1077 bp |
Protein Length | 358 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637926688 |
Product | secretion protein HlyD |
Protein accession | YP_533435 |
Protein GI | 90425065 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.551051 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGATGA AGGATTTCAA AAGGCCGTGG ATCGCCGCGT TGCTGGTCGT GCTGGTCGGC GGCGTTGGCT ATTTTGTCTG GAAAGAGTTC GGCAGGAGCA GTCTTCCGCA AGGCATTGCC AGCGGCAATG GCCGTATCGA AGCGACGGAG ATCGACATCG CCACCAAGAC GCCGGGGCGG ATCCGGGAAA TCCTGGTCAA CGAAGGTGAT TTCGTGACGG CCGGCCAGGT GCTCGCCCGC ATGGACACCG ATCAACTGGA AGCGCAGCGC CGACAGGCGA TCGCCCAGCA TCATCGGGCG ATCGTCAGTG TTGACACGGC CAAGAGCCTC GTCGCGCAAA GAGCTGCCGA ACGCACCGCC GCCATCGCAG TCATCGCCCA GCGTGAGGCG CAGCTCGATT CGATCCAGAG AAAGCTCGGG CGCTCGGAGC GGCTGATCAC CACCAGTGCA GTGTCGCAGC AGGTTCTCGA TGACGATCGG GCGAACGCCG AGGGCGCGAA GGCTGCCGTC GCAGCGGCTC AGGCGCAACT CGCGGCGGCC GAGGCCGCCA TCAGCGCCGC CAATGCGCAG GTGATCGATG CCGGAGCATC CGTCGATGCG ACCCAGGCGG CGGTCGAAAG CATCACCGTC GACATCAACG ATGCGATTCT GAAATCGCCT CGCGACGGTC GCGTGCAATA CCGGGTCGTG CAGCCGGGTG AAGTGCTGTC CGCCGGCGGG CGGGTGCTCA ATCTGGTTGA TCTCGGCGAT GTCTACATGA CGTTCTTCCT GCCGACCGCG CAGGTCGGAC GGATACCGAT CGGAGCCGAG GTCCGGCTCG TGCTTGATGC CGTCCCGCAA GTCGTCATTC CTGCCAAGGC GACCTTCGTG GCGGACGTCG CCCAGTTCAC GCCGAAGACC GTCGAGACCG AAGAAGAGCG GCAGAAGCTG ATGTTCAGGG TGAAGGCGCA CATCTCGCCG GCGCTGTTGA AGAAGTACAT CCAGCAGGTC AAAACTGGTC TTCCCGGCAT GGCCTATGTC AAGTTTGATC CGAAGGCGGA ATGGCCGGCC AATCTCAACG GAACGCTGGC CCAATGA
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Protein sequence | MTMKDFKRPW IAALLVVLVG GVGYFVWKEF GRSSLPQGIA SGNGRIEATE IDIATKTPGR IREILVNEGD FVTAGQVLAR MDTDQLEAQR RQAIAQHHRA IVSVDTAKSL VAQRAAERTA AIAVIAQREA QLDSIQRKLG RSERLITTSA VSQQVLDDDR ANAEGAKAAV AAAQAQLAAA EAAISAANAQ VIDAGASVDA TQAAVESITV DINDAILKSP RDGRVQYRVV QPGEVLSAGG RVLNLVDLGD VYMTFFLPTA QVGRIPIGAE VRLVLDAVPQ VVIPAKATFV ADVAQFTPKT VETEEERQKL MFRVKAHISP ALLKKYIQQV KTGLPGMAYV KFDPKAEWPA NLNGTLAQ
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