Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3541 |
Symbol | |
ID | 3973948 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 3933765 |
End bp | 3934733 |
Gene Length | 969 bp |
Protein Length | 322 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637926652 |
Product | type II secretion system protein E |
Protein accession | YP_533399 |
Protein GI | 90425029 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | [TIGR02782] P-type conjugative transfer ATPase TrbB |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0478777 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.532138 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGGGTA TCACTCAGCA ATCTGCAGCG ATTATGCGTG GCGCGCGCAT GCTGCGCACG GCGCTCGGGG CAGCGATCGC CGGCTTCCTG GAAGACCCTG CGGTCGTCGA GGTGATGCTC AACCCCGACG GGCGGCTCTG GATCGATCGG CTTTCGGAGG GGCTCTTTGA TACTGGCGAA CGCCTGAACG CCGCCGACGG CGAGCGGATC GTCCGCCTGG TCGCGCACCA TGTCGGCGCC GAGGTTCATG CCGGAAGTCC CCGCGTCTCA GCCGAATTGC CCGAGACCGG GGAACGGTTC GAAGGGTTGC TGCCGCCGGT GGTCACCGCG CCGACGTTTG CGATCCGCAA ACCCGCCGTC GCCGTGTTCA CGCTCGATGA CTACGTGGCT GCCGGCATCA TGTCCGCCGG GCAGGCGACG GCGCTGCGTC GCGGCGTCGC GGCGCGCAAC AACATCCTCG TTGCCGGCGG GACCTCGACC GGCAAGACCA CGCTCACCAA TGCGCTGCTC GCCGAGGTCG CTAAAACAGC CGATCGCGTG GTGCTGATCG AGGATACCCG GGAGCTGCAA TGTCTGGCGC CCAATCTGGT GGCGCTTCGG ACCAAGGACG GCGTTGTGTC GCTGTCGGAG CTGGTGCGCG CCTCGCTTCG CCTGCGCCCC GACCGCATCC CGATCGGTGA GGTCCGCGGC GCCGAGGCAC TCGACCTGTT GAAGGCCTGG GGCACCGGCC ACCCGGGTGG CGTCGGCACC ATCCACGCCG GCAGCGCCCT CGGCGCATTG CGCCGTCTTG AGCAACTCAT CCAGGAAGCC GTCGTCACCG TCCCGCGCTC CTTGATCGCC GAGACCATCG ACGTCGTCGC GGTGCTGTCC GGCCGCGGTT CGGAACGCCG GCTCACGGAG CTGATGCGCG TCACCGGGCT CGGGCCCGCC GGCGACTACA CCCTTTCACC AGAAGGAGAT CGATCATGA
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Protein sequence | MAGITQQSAA IMRGARMLRT ALGAAIAGFL EDPAVVEVML NPDGRLWIDR LSEGLFDTGE RLNAADGERI VRLVAHHVGA EVHAGSPRVS AELPETGERF EGLLPPVVTA PTFAIRKPAV AVFTLDDYVA AGIMSAGQAT ALRRGVAARN NILVAGGTST GKTTLTNALL AEVAKTADRV VLIEDTRELQ CLAPNLVALR TKDGVVSLSE LVRASLRLRP DRIPIGEVRG AEALDLLKAW GTGHPGGVGT IHAGSALGAL RRLEQLIQEA VVTVPRSLIA ETIDVVAVLS GRGSERRLTE LMRVTGLGPA GDYTLSPEGD RS
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