Gene RPC_3539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_3539 
Symbol 
ID3973946 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp3933161 
End bp3933424 
Gene Length264 bp 
Protein Length87 aa 
Translation table11 
GC content67% 
IMG OID637926650 
Productconjugal transfer protein TrbD 
Protein accessionYP_533397 
Protein GI90425027 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5268] Type IV secretory pathway, TrbD component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00461066 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.47001 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGGAGA CGATCCCCGG ATTTGCTGCG CCTGTTCATC GCGCGCTCAC CGAACACATC 
CTGCTCGGCG GCGCGCCGCG CGCGGTCGCG ATCCTCAACG GCACTCTGGC GGCAGCGCTC
GGACTCGGCC TGCGGTTGTG GTTGGCCGGT CTGTTGCTCG CATTTCTCGG TCACGCCGCC
GCGGTCTGGG CCGCCAAGCG CGATCCGCAG TTCGTCGATG TGGTGCGCCG CCATCTGCGC
ATCCCCGGTC ATCTTTCCGT TTGA
 
Protein sequence
MEETIPGFAA PVHRALTEHI LLGGAPRAVA ILNGTLAAAL GLGLRLWLAG LLLAFLGHAA 
AVWAAKRDPQ FVDVVRRHLR IPGHLSV