Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3539 |
Symbol | |
ID | 3973946 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 3933161 |
End bp | 3933424 |
Gene Length | 264 bp |
Protein Length | 87 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637926650 |
Product | conjugal transfer protein TrbD |
Protein accession | YP_533397 |
Protein GI | 90425027 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5268] Type IV secretory pathway, TrbD component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00461066 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.47001 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGGAGA CGATCCCCGG ATTTGCTGCG CCTGTTCATC GCGCGCTCAC CGAACACATC CTGCTCGGCG GCGCGCCGCG CGCGGTCGCG ATCCTCAACG GCACTCTGGC GGCAGCGCTC GGACTCGGCC TGCGGTTGTG GTTGGCCGGT CTGTTGCTCG CATTTCTCGG TCACGCCGCC GCGGTCTGGG CCGCCAAGCG CGATCCGCAG TTCGTCGATG TGGTGCGCCG CCATCTGCGC ATCCCCGGTC ATCTTTCCGT TTGA
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Protein sequence | MEETIPGFAA PVHRALTEHI LLGGAPRAVA ILNGTLAAAL GLGLRLWLAG LLLAFLGHAA AVWAAKRDPQ FVDVVRRHLR IPGHLSV
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