Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3532 |
Symbol | |
ID | 3973939 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 3925335 |
End bp | 3926570 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637926643 |
Product | conjugation TrbI-like protein |
Protein accession | YP_533390 |
Protein GI | 90425020 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.404539 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGGCG ACCGGCGACA GGACGACGCC TCCGATGCGT TTCGGTCGGC CAGCGATCCG GTCGCGGCGT TTCAAATCCG ACCAGAGCGA CCGAGGGTGA CGCGGCTCTC GCGCAAGGTG CTGATGGCCG GTACCGGGAT TGCGCTGGTG GCGGTGTCCG GCGCGGTGTT CTGGGCGTTG CAGAACAATC GCCATCGTGC GGACGCTCCC GAGGAGCTCT ACAGCACGGA GCATCGCACT AAGGCCGATG GATTGTCCGG GCTGCCACGG GATTACGCCG GCATCCCGCG CCAAGCGACG CCGCTTGGTC CGCCGCTGCC CGGCGATCTC GGGCGGCCCA TGCTCAACGC CGGCGCGGCA TCGAACACGG TCATCCCAGC TGCACCCGCG GCGGATCCGG AGGCGCAGCG GCGGGGCCAA GAGATCGAGG CGGCGCGGTT GAGCCGGTTG TTTGCACCGA CCAACACCCG AGAACTGCCT CCGATCGTGC CAACTCCGGC GTCGGCAACA CCACCTGAAG CCAGCGCAGT GTTGAATCCC CTCCCACAAC CGCCGGCCGA TTCGACCTTC GCGCAGAACG GCCAGGACCG GAAACTCGCC TTCATCAACG CCTCGGTCGA TCGGCGGACG ACGAGCCCAG ACCGGCTGGC AGCTCCGGCC TCGCCTTACG TGGTGCAGGC CGGCACCGTC ATTCCCGGCG CGCTGATCAC CGGCATCCGC TCGGACTTGC CGGGCCTGAT CACCGCCCAG GTCTCGGAAA ACGTCTATGA CAGCCCGAGC GGCAAGTTTC TTCTCATTCC ACAAGGCGCG CGGCTGATCG GCCAGTACGA CAGCCAGGTC GCTTTCGGTC AGTCGCGCGT CCTCCTGGTC TGGACCCGGC TGATCATGCC GAACGGCAAA TCGATCGTAC TGGAGCGCCA GCCCGGCGCC GACACCGCCG GGTATGCGGG ACTGGAGGAC GAGGTCGACA ACCATTGGGG TGCGCTGTTC AAGGCGGCGA TGCTCTCGAC GCTGCTCAGC GTCGGCTCCG AAGTCGGCAC CAGCGGCAGC GAGGACGATG TCGTCCAGGC GATCCGCCGT GGCGGCTCGC AGAGTTTCAA TCAGGTCGGG CAACGCGTCG TCAGCCGCAA CCTCGACATT CAGCCGACGC TCACGATCCG CCCCGGATTC CCGGTGCGTG TGATCGTCAA CCGCGACCTG GTGCTGGCGC CATACAATCA GGAGGCCGCA AAATGA
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Protein sequence | MNGDRRQDDA SDAFRSASDP VAAFQIRPER PRVTRLSRKV LMAGTGIALV AVSGAVFWAL QNNRHRADAP EELYSTEHRT KADGLSGLPR DYAGIPRQAT PLGPPLPGDL GRPMLNAGAA SNTVIPAAPA ADPEAQRRGQ EIEAARLSRL FAPTNTRELP PIVPTPASAT PPEASAVLNP LPQPPADSTF AQNGQDRKLA FINASVDRRT TSPDRLAAPA SPYVVQAGTV IPGALITGIR SDLPGLITAQ VSENVYDSPS GKFLLIPQGA RLIGQYDSQV AFGQSRVLLV WTRLIMPNGK SIVLERQPGA DTAGYAGLED EVDNHWGALF KAAMLSTLLS VGSEVGTSGS EDDVVQAIRR GGSQSFNQVG QRVVSRNLDI QPTLTIRPGF PVRVIVNRDL VLAPYNQEAA K
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