Gene RPC_3525 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_3525 
Symbol 
ID3973893 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp3919273 
End bp3919956 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content56% 
IMG OID637926636 
Productdiguanylate cyclase 
Protein accessionYP_533383 
Protein GI90425013 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.395826 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.08798 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCGCGA GCCGGCTCCT CGGCATCATC ATCACTTTGC AATTGGCGTT AACCACCGTC 
TTCCACTTTC TGGGAAAACA GCATGGCGTG CGAGACATTG TGCAGATGCA ACATCGTGCG
GATCTGCAAG CGCTGGCGCT CGAACTCGAG ATCAAGGCGA CGACCGACCC GTTAACTGGA
CTCTTCAACC GCGGGAAGTT TGATGTGGTG CTCGGTTATG AATTGGCTCG AGCGGAACGT
TACGGAAATC CGCTATCGCT AATTGTCTAT GACATTGATC ACTTCAAGGA AGTCAATGAT
GCTTACGGCC ATCAGGCGGG TGATCGGGTT CTGGTCCAAT TGTCCGCGAT TGTTTCGGCC
GCGATCCGCC AGACGGACCT CTTGGTCAGA TGGGGTGGAG AGGAATTCGT CCTCGTGCTG
CCGGATACGG ACGGAGCCAC GGCTCGACTG GTTGCTGAGA AGCTTCGGCA AGCGATCGAG
CAGTCTGGCT TCGACCTTGC AGGGACGATC ACCTGCAGCT TCGGCGTCAG CATCTATGTT
GAAGGCGATT CGGTGGATAG TCTCGTGGCA AGGACCGACA ATGCTCTCTA CCGAGCCAAG
ATGAATGGCC GGAACCGCGT CGAGTATGCT TCCGCAAGAA TGATGTCTCC GAGTATCGCG
CCGTCGCTGG AGCCGAGAGC GTAG
 
Protein sequence
MFASRLLGII ITLQLALTTV FHFLGKQHGV RDIVQMQHRA DLQALALELE IKATTDPLTG 
LFNRGKFDVV LGYELARAER YGNPLSLIVY DIDHFKEVND AYGHQAGDRV LVQLSAIVSA
AIRQTDLLVR WGGEEFVLVL PDTDGATARL VAEKLRQAIE QSGFDLAGTI TCSFGVSIYV
EGDSVDSLVA RTDNALYRAK MNGRNRVEYA SARMMSPSIA PSLEPRA