| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3483 |
|---|
| Symbol | |
|---|
| ID | 3972850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 3869171 |
|---|
| End bp | 3869827 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637926595 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_533342 |
|---|
| Protein GI | 90424972 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.961452 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAGCG ACACCCGCAG CGCGATCCTC ACGGCGGCCG AGCGGCTCTA TGCCGCGCGC
GGCTTCGCCG ACGTCACGCT GCGCGACATC GTGGCGGAAG CCAACGTCAA CCTCGCCGCG
GTGAACTACC ATTTCGGCTC CAAGGACGAA TTGATCACCG AATTGTTCGT CAGCCGCTCG
CTCGCCACCA ACCGCGAACG GCTCAACGAG TTGAAGGCGG CGGAATTAGC CGGCGGCGGA
AGCGCGCCGA TCGAAGAGGT GCTGCGCGCG CTGGTCGGGC CGACGCTGCG CGGCTGCCTC
GGAGCCGACC AGCAGCGCTC CGACGCCGCG CGCTTCATGA TCCGCGCCTC GGTCGAGGCG
ATCGCGCCGA TCCGCAAGAT CCGCAACCGC GAGATCGATC ATTTGCGCAA ATTCGCCGCG
GCGATGCGCC GCGCGCTGCC CGGCGTTGGC GAGGTGGAGA TATTCTGGGG CCTGCATTTC
GCGCTGGCGA TGGCGCACCA GACCATCCGC GACGGCGAGC GCCTGCAAAA ACTCTCCGAC
GGCCGCTGCG ATCTCGACGA CATCGACGGC GTGATCGACC GCGTGGTCGA CGTCGCGGCG
GCGGCGCTCT GCACCGCGGC GAAGACGGAC AAGCCGGCGG CGCGGCGCGG CAGGTAG
|
|---|
| Protein sequence | MSSDTRSAIL TAAERLYAAR GFADVTLRDI VAEANVNLAA VNYHFGSKDE LITELFVSRS
LATNRERLNE LKAAELAGGG SAPIEEVLRA LVGPTLRGCL GADQQRSDAA RFMIRASVEA
IAPIRKIRNR EIDHLRKFAA AMRRALPGVG EVEIFWGLHF ALAMAHQTIR DGERLQKLSD
GRCDLDDIDG VIDRVVDVAA AALCTAAKTD KPAARRGR
|
|---|
| |