| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3447 |
|---|
| Symbol | rplD |
|---|
| ID | 3972115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3823192 |
|---|
| End bp | 3823812 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637926558 |
|---|
| Product | 50S ribosomal protein L4 |
|---|
| Protein accession | YP_533306 |
|---|
| Protein GI | 90424936 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0088] Ribosomal protein L4 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.628566 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTGA AAGTCACCAC GCTCGAGGGC AAGGAAGCTG GCTCGGTTCA GCTCTCCGAC
GAGATCTTCG GTCTCGACCC CCGGGTCGAT ATCATTCAGC GTTGCGTCAA CTGGCAGCTC
GCAAAGCGCC AGGCCGGCAC CCACAAGGCC AAGGGCCGTG CGGAAGTCTG GCGCACCGGC
AAGAAGATGT ACAAGCAGAA GGGCACCGGT GGTGCGCGTC ACGGTTCGCA GCGGGTGCCG
CAGTTCCGCG GCGGTGGCCG TGCCTTCGGA CCGGTGGTTC GTTCGCACGC CTTCGATCTG
CCGAAGAAGG TTCGTGCGCT GGCGCTGAAG CATGCGCTGT CCGCCAAGGC CAAGGACGGC
GGGCTGATCG TGATCGAATC CGCGACGCTG GAAGCCGCCA AGACCAAGGC TTTGGTCGGG
CACTTCTCGG GTCTGGGTTT GACCAGCGCG CTGATCATCG ACGGTGCCGA GCTCAACAAC
GGTTTCGCGG TTGCGGCTCG CAACATTCCG AACATCGACG TGCTGCCGAT CCAGGGCATC
AACGTCTATG ACATTCTTCG TCGTCAGAAG CTGGTTTTGA CCAAGGCGGC GGTCGATGCG
TTGGAGGCGC GCTTCAAATG A
|
|---|
| Protein sequence | MELKVTTLEG KEAGSVQLSD EIFGLDPRVD IIQRCVNWQL AKRQAGTHKA KGRAEVWRTG
KKMYKQKGTG GARHGSQRVP QFRGGGRAFG PVVRSHAFDL PKKVRALALK HALSAKAKDG
GLIVIESATL EAAKTKALVG HFSGLGLTSA LIIDGAELNN GFAVAARNIP NIDVLPIQGI
NVYDILRRQK LVLTKAAVDA LEARFK
|
|---|
| |