Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3421 |
Symbol | |
ID | 3970465 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 3808326 |
End bp | 3809120 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637926532 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_533280 |
Protein GI | 90424910 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.126254 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGATCG ATCTTTCCGG CAAGACCGCG CTGGTGACCG GCTCCACCGC CGGCATCGGC CACGCCATCG CCAAGGGCCT CGCCGCCGCG GGCGCCAGCG TGGTGGTCAA TGGCCGCAGC CAGGGCAAGG TCGACGCCGC GGTCGCGGCG ATCGGCAAGG TCGCCGCCGG CGGCAAGATC ATCGGCGTCG CCGCCGACGT CTCCACCGCG GACGGCTGCG ACGCGCTGGT CACCGCCTAT CCGGACGTCG ACATCCTGAT CAACAATGCC GGCATCTTCG AGCCGAAGGG TTTCTTCGAC ATTCCCGACG AGGACTGGGC GCGGTTCTTC GACGTCAACG TGATGAGCGG GATAAGGCTG TCGCGCGCCT ATATGCCGGC GATGCTGAGC CGCAACTGGG GCCGCATCGT CTTCATCGCC TCGGAATCCG CGATCATGAT TCCGAAGGAG ATGATCCACT ACGGCATGAC CAAGACCGCC CAGCTCTCGG TCTCGCGCGG GCTCGCCGAG CTGACCCGCG GCACCGCGGT CACCGTCAAC GCGGTGATGC CGGGGCCGAC GATGTCGGAA GGCGTGCAGA CCTTCGTCGC CGATCTCGCC AGGCAGAACG GCGAATCCGA AGCCGAGGCC GCGGCGAACT TCGTCAAACA GCACCGCCCA GGCTCGCTGA TCCAGCGCTT CGCCAGCGTC GAGGAGGTCG CCAACATGGT GGTGTATGTC AGCTCGAAAG AGGCCTCCGC CACCAACGGC GCCGCGCTGC GCGTCGAGGG CGGGCTGATC CAGACCATCG CGTGA
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Protein sequence | MKIDLSGKTA LVTGSTAGIG HAIAKGLAAA GASVVVNGRS QGKVDAAVAA IGKVAAGGKI IGVAADVSTA DGCDALVTAY PDVDILINNA GIFEPKGFFD IPDEDWARFF DVNVMSGIRL SRAYMPAMLS RNWGRIVFIA SESAIMIPKE MIHYGMTKTA QLSVSRGLAE LTRGTAVTVN AVMPGPTMSE GVQTFVADLA RQNGESEAEA AANFVKQHRP GSLIQRFASV EEVANMVVYV SSKEASATNG AALRVEGGLI QTIA
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