Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3371 |
Symbol | |
ID | 3970531 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 3745634 |
End bp | 3746746 |
Gene Length | 1113 bp |
Protein Length | 370 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637926483 |
Product | secretion protein HlyD |
Protein accession | YP_533231 |
Protein GI | 90424861 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.165029 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTAAAA AGAGTGTCAT CGGGTTGTTG GCGGTCGCGC TGCTGGCGGG AGCATCGTAC TACGTCGTCA AGCACGGCAT CCCCGGCCGT CACGCCCCGG CGCATCGCGG CGCGCCGGCG CAGACGGTGG CGGCGCAGAC CGCTCAGATG CAGACGTGGC AACCGGCCAT GGAGCTGGTC GGAGAGCTGC GCGCCTCCAA GGGCGCGGAT CTCGCGCTGC AAGTCTCCGG CATCGTGCAG TCGCTGTCGT TCGAATCCGG CGACACCGTG CAAGCCGGCG CGCCGCTGCT GCGGCTGGTC GCCGACGACC AGATCGCCAA ACTCGACTCG CTGAAGGCCA CCGCCGAACT GAACGTCCTG ATCCTGAAAC GCGACACCGA GCAGCTCAAG ATCAAGGCCG TGAGCCAGGC CACGGTGGAC AATGACGAGG CCAATCTGAA GAACGCCAAG GCTCTGGTGG CGCAACAGCA GGCGTTGGTC GCGCAATATA GCCTGACGGC GGCCTTTGCG GGACGCCTCG GAATCCGCGG CGTCGATCTC GGCCAGTATC TCAGCGCCGG CACGACGATC GTCACGCTGC AGGCGCTGGA TCCCTTGTTC GCCGATTTCT TCGTGCCGCA ACAATTCTTC GGCCGCCTGA AGGTTGGGCA GCCGGCGAAA GTGAAAGTCG ACTCCTTTCC CGGGCAGGAG TTTGCCGCCA TCGTCAGCGC CATCAACGCC AAGGTCGAGA GCGGCAGCCG CAACGTCAAG GTGCGCGCGG AGCTGAAGAA CCCGCAAGGC CGGCTGGTGC CCGGCATGTT CGCCAAGGTC GCGCTCGAGA TCGACGCGGC CGAAAAATTC GTGACGCTGC CGCAGACCGC CATCGTCTCC AATCCCTACG GCTCGACCGT GTTCGTGCTG GACAAGGGCG CCGACGGCAC CGGCCTGGTG GCCCGGGAGA CCTTCGTCAA GCTCGGGCAG GCGCGCGGCG ATTTCGTCGC CATCGTGTCC GGATTGAAGG AAGGCGAGAC GGTGGTGGTG GCCGGCCAGA TCAAGCTGCG CAACGGCACG CCGGTGGTGA TCGACAACAA CAACATTCCC GAGGCCAAGC TCGATCCCAA AGTGTCGGAC TGA
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Protein sequence | MSKKSVIGLL AVALLAGASY YVVKHGIPGR HAPAHRGAPA QTVAAQTAQM QTWQPAMELV GELRASKGAD LALQVSGIVQ SLSFESGDTV QAGAPLLRLV ADDQIAKLDS LKATAELNVL ILKRDTEQLK IKAVSQATVD NDEANLKNAK ALVAQQQALV AQYSLTAAFA GRLGIRGVDL GQYLSAGTTI VTLQALDPLF ADFFVPQQFF GRLKVGQPAK VKVDSFPGQE FAAIVSAINA KVESGSRNVK VRAELKNPQG RLVPGMFAKV ALEIDAAEKF VTLPQTAIVS NPYGSTVFVL DKGADGTGLV ARETFVKLGQ ARGDFVAIVS GLKEGETVVV AGQIKLRNGT PVVIDNNNIP EAKLDPKVSD
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