| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3321 |
|---|
| Symbol | |
|---|
| ID | 3973008 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3676831 |
|---|
| End bp | 3677856 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637926432 |
|---|
| Product | lytic transglycosylase, catalytic |
|---|
| Protein accession | YP_533182 |
|---|
| Protein GI | 90424812 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGCAG CTCGCGCCTT GCGATCGGTT GTTTGTTTGC TGGTGCTGGC TGCGCTGACC
GTCAGTGCGC CGCTGTGCGC GGAGGATGCG CCGCCGAACA GCAACGCGAC GGCGACCCCA
CCGGGAGCGC CGCCGCCGAA TGCCGATACT GAGCGCAAGC CGGAGACGCC GCAGCAGCCG
GAGCAAGTGG CGCCGCCGAC GGAAGCCGCG CACGACGGTG ATACCCGCGA GGCGATCTGC
CTGATGATCG AATCCGCGGC GAAGGCGCAC GATTTGCCGT TGGAGTTCTT CGCCCGGGTG
ATCTGGCAGG AAAGCCGATT TCAGCCCGAT GCGGTCGGTC CCTTGACCCG CAACGGCAGC
CGCGCGCAGG GCATCGCGCA GTTCATGCCC GGCACTGCCA ATGAGCGCAG CTTGCTCGAT
CCGTTCGATC CGGTCCAAGC GCTGCCGAAA TCCGCGGAAT TCCTCAGCGA GTTGCGCGGC
CAGTTCGGCA ATCTCGGGCT CGCGGCTGCA GCCTACAATG CCGGGCCGCG TCGGGTGCAG
GAGTGGATTG CCGGCACCGG TTATTTGCCG CAGGAAACCC GCAACTACGT CTCCGCCATC
ACCGGCACCT CGGTCGACGA TTGGGCGACG ATCGGCCGCA ACGGCAAGAC CGCCGAACCG
ACGGCGCGGA CCAGTTGCCG CACGCTGATG GCGCTGTTGA CGCGCGCGCC CAATCCGTTC
GTGACGCAGC TGCAACAGCG GGTGAAACTC GGCGCCGATC GGCCATGGGG CGTCCAGTTG
GCGGCCGGCT TCAACCGCGA TCGTGCGCTG TCGCTCTACG CCCGTGCCAT GACGCGTTTG
AGTTCGGTGA TTGGCGATCA GGATCCAAAT CTGCTGAGTT CGGTATGGCG CAGTCGCGGC
ACGCGCACGT TCTACCAAGT GCGGATCGGC GCCGAGAGCC GCGTTGCGGC GAATGATCTG
TGTCATCGGA TTCGTCGCGC CGGCGGCGCC TGCCTGGTGT TGCGCAATGC GCGATTGAGC
GGCTGA
|
|---|
| Protein sequence | MPAARALRSV VCLLVLAALT VSAPLCAEDA PPNSNATATP PGAPPPNADT ERKPETPQQP
EQVAPPTEAA HDGDTREAIC LMIESAAKAH DLPLEFFARV IWQESRFQPD AVGPLTRNGS
RAQGIAQFMP GTANERSLLD PFDPVQALPK SAEFLSELRG QFGNLGLAAA AYNAGPRRVQ
EWIAGTGYLP QETRNYVSAI TGTSVDDWAT IGRNGKTAEP TARTSCRTLM ALLTRAPNPF
VTQLQQRVKL GADRPWGVQL AAGFNRDRAL SLYARAMTRL SSVIGDQDPN LLSSVWRSRG
TRTFYQVRIG AESRVAANDL CHRIRRAGGA CLVLRNARLS G
|
|---|
| |