| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3294 |
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| Symbol | |
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| ID | 3972559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3647778 |
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| End bp | 3650165 |
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| Gene Length | 2388 bp |
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| Protein Length | 795 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637926405 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_533155 |
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| Protein GI | 90424785 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.36347 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCAA AACCCAAGAC CGCGCCCACC GACCTCGACA CCCTCAGCAA GGCCAAAGCA
AAGGTCGAGC TGAAGCGGCT GTCGCTCGAG ATCGAGCGGC ACAACAACGC CTACTACCAG
GACGACGCGC CGAAGATCTC CGACGCCGAG TACGATGCGC TGCGCCACCG GGTCGAAGCC
ATCGAGGCTA AGTTCCCCGA GCTGGTCAGC TCTGACTCAC CGACCCAGAA GGTCGGTGCC
GCGCCGGCGC GCGGCTTTGC CAAGGTGCAG CACGCGGTGC CGATGCTGTC GCTCGGTAAT
GCATTCAGCG ACGACGAGGT CGCCGAGTTT CTCACCCGGG TGCGGCGCTT TCTCAAACTC
GACGCGGAAC AAATCCCGGC GATCGTCGCC GAGCCGAAGA TCGACGGGCT GTCGCTGTCG
CTGCGCTATG AGCACGGCAA GCTAGTGCGC GCCGCCACCC GCGGCGACGG CTTCACCGGC
GAGGATGTCA CCGCCAACGT CCGCACCATC AAGGATATTC CCCACGCGCT CGCGGTTGCC
GAGCCGCCCG CCGCCTGCGA ATTGCGCGGC GAGGTCTATA TGCTGAAGAG CGATTTTCTC
GCGCTGAACC AGCGCCAGGA AACGGCCGGT GAGCCCCCGT TCGCCAATCC GCGCAATTCC
GCCGCGGGCT CGTTGCGGCA GAAGGACGTC GCGATCACCG CGTCGCGGCC GTTGAAATTC
TTCGCTTATG CGTGGGGCGA ATTCTCCGAT CTTCCGGAAG CGACCCAGTA CGGCATGCTG
GGCTGGCTGA AGCGCGCCGG CTTCACCGTC AATCCGCTGA TCACGCTGTG CAAGAGCGTC
GACGACGCGC TGGCGTTCTA TCGCAAGATC GGCGAAGAGC GCGCGACGCT GCCCTACGAC
ATCGACGGCG TGGTCTACAA GGTCGACCGG CTCGATTGGC AGGAGCGGCT CGGCTTCGCC
GGCCGCGCGC CGCGCTGGGC GATCGCGCAT AAATTCGCCG CCGAACAGGC CACCACGATT
CTCAACGGCA TCGAGATTCA GGTCGGCCGC ACCGGCGCGC TAACCCCGGT GGCGCGGCTC
GCCCCCGTCA CCGTCGGCGG CGTGGTGGTG CAGAACGCCA CGCTGCACAA CGAGGACTAC
ATCAAGAGCC TCGACATCCA CATCGGCGAC ACCGTGGTGG TGCAGCGCGC CGGCGACGTG
ATTCCGCAGA TCGTCAGCGT GGTGCGCGAC AAGCGGCCGG AGGATGCCGA GCCATACGAA
TTTCCGAAGT TCTGTCCCGC CTGCGGTAGC CATGCAGTGA GAGATGAAGA CGAGGGCGAA
GCTGTCCGGC GCTGTACCGG TGGGCTTATT TGCCCTGCCC AAGCGATCGA ACGCCTGCGC
CATTTCGTTT CACGGGGAGC CTTCGACATC GCGGGGTTCG GCGAAACTTA TGTTGAACTG
TTATATGAAG AGGGATTGGT GCGAAATCCC GCGGACATTT TTGCACTTCA TTCAAAAGTC
GATGAACTCA AAGCGGCATT GTTCAGAAAG CGTGAATCTC TGGCAACGCA GAGGGAAGAG
AAAACCGGAA AGAAGCGGAA GAGTTCGCTC TCCGAAGAGA AACGCCAATA CACTGATGTC
GAGAATCTAT TGGCCGCGAT CGATGCCAGA CGAACCGTCG CATTCAATCG CTTCATATTT
GGCTTGGGAA TTCGGCATGT GGGAGAGGTG ACGTCGAAGG CTTTGGTCAG ACATTTTGCG
GATGTGAAGG CATTCCTCGA TGGCGTTGAC GCTGCCGCAC TGGCGCGTCC GGGTCCTGCA
TGGCTCGATC TCAAGAACGT CAGATACATC GGTGAAATCA CGTTGGAGCG GCTGCTGGAA
ATTCAGGGTG GGGCTGACAC AAACGAAGAA CGTCAAGGGT TTCAGCCGGA CGCGCGTCAG
CGAGCGAGCC TGCTTTCTCA CTATGGCAAT GAAGAGAAGA TCGCCGGTGC TTTGCAGGCA
GCTCGTTCGG AGGCTCCAGG TCCAGCCTTT CAGCAACTTG CGAACGACAG TGAGATAGGG
GAGGTTGCGA CGCAATCCTT GATCGATTTC TTCGAGGAGA CCAACAACAG GCAAGTGGTC
ACAGCGCTCA TGGATCAAGT GCAGGTTGAA AGGCCTGCCG CCGCCTCCGC GAAATCGCCT
ATCTCCGGTA AAATAGTAGT ATTCACCGGC GCGCTTGAGC GAACAACGAG AGACGAGGCG
AAAGCGATTG CCGAACGTCT CGGGGCTAAA GTCGCTAGTT CGGTGTCTTC AAAGACGGAT
TTGGTGGTGG CTGGACCCAG CGCGGGCTCG AAGCTGAGGG ATGCGCAGAA ATTTGGCGTT
AAGGTATTGA CTGAAGAGGA GTGGGCTGAG ATCTCAGGAA ATGAATAG
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| Protein sequence | MTAKPKTAPT DLDTLSKAKA KVELKRLSLE IERHNNAYYQ DDAPKISDAE YDALRHRVEA
IEAKFPELVS SDSPTQKVGA APARGFAKVQ HAVPMLSLGN AFSDDEVAEF LTRVRRFLKL
DAEQIPAIVA EPKIDGLSLS LRYEHGKLVR AATRGDGFTG EDVTANVRTI KDIPHALAVA
EPPAACELRG EVYMLKSDFL ALNQRQETAG EPPFANPRNS AAGSLRQKDV AITASRPLKF
FAYAWGEFSD LPEATQYGML GWLKRAGFTV NPLITLCKSV DDALAFYRKI GEERATLPYD
IDGVVYKVDR LDWQERLGFA GRAPRWAIAH KFAAEQATTI LNGIEIQVGR TGALTPVARL
APVTVGGVVV QNATLHNEDY IKSLDIHIGD TVVVQRAGDV IPQIVSVVRD KRPEDAEPYE
FPKFCPACGS HAVRDEDEGE AVRRCTGGLI CPAQAIERLR HFVSRGAFDI AGFGETYVEL
LYEEGLVRNP ADIFALHSKV DELKAALFRK RESLATQREE KTGKKRKSSL SEEKRQYTDV
ENLLAAIDAR RTVAFNRFIF GLGIRHVGEV TSKALVRHFA DVKAFLDGVD AAALARPGPA
WLDLKNVRYI GEITLERLLE IQGGADTNEE RQGFQPDARQ RASLLSHYGN EEKIAGALQA
ARSEAPGPAF QQLANDSEIG EVATQSLIDF FEETNNRQVV TALMDQVQVE RPAAASAKSP
ISGKIVVFTG ALERTTRDEA KAIAERLGAK VASSVSSKTD LVVAGPSAGS KLRDAQKFGV
KVLTEEEWAE ISGNE
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