| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3132 |
|---|
| Symbol | |
|---|
| ID | 3972781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 3477291 |
|---|
| End bp | 3479522 |
|---|
| Gene Length | 2232 bp |
|---|
| Protein Length | 743 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637926241 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_532993 |
|---|
| Protein GI | 90424623 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.583735 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTGGTTTC GCTCGATCGT GGACTCGGCC TCCGACGGGA TCATCGTGGT GGATGCCTCC
GAAACGGTTC GGGTGTTCAA CCCGGCCTGC GAAAGACTGT TCGGCTACAC GGCCCCGGAC
GTGGTCGGCC AGAAGGTGAC GCTGCTGATG CCCGGCCAGG ATTATCTGTG GCAGCATCGC
AGCGTTTCCT CGGGATTCGG ACGACGCAAG GACGGCTCGA TCTTCCCGAT GGACCTGTCG
GTCGGACAAA CCGATTTTGA TCATTCGATC GCCTTCGTCG GCATCGTTCG CGACCTGACC
GAGCGCCGCC GGGCCGCCCA GGCGATGCGC GACAGCGAAC GCAACTACCG GCTGCTGGTC
GAAGGCGTCA CCGACTACGC CATCTACATG CTCGATCTCG ACGGCCGCAT CACCAGCTGG
AACAGCGGCG CGCATCGCAT CAAGCAATAC ACCGCGTCGG AAATTCTCGG CAAACACTTC
AGCGAATTCT ACACCCAGGA GGAACGACAG CACGGCGTGC CAGAGCACAA TCTCAAGCTT
GCCAAGCGTG TGGGACGCTG CGAGACCAAG GGATGGCGGC GCCGCAAGGA CGGCAGCCAG
TTCTGGGCCC ATGTGGTGAT CGAGCCGCTG CGCAACGAAA GCGGCGCGCC GATCGGCTTT
GCCAAGCTCA CCAGCGACAT CACCGAACGG CGGCGCGCCG AACAGGTGAT CCGCGAGGCC
GACGAGCGCA TCAATACGCT GATCGAAACC GTGGTCGATG GCGTTCTGCT GTTCGATGCC
GTCGGGAAAA TCCAGATCTT CAACGCGGCC TGTCAGCGGC TGTTCGGTTA CCACGTCGAG
GAGGTTGTCG GCCAGAACTT CAAGATGCTG TTGGATCGCT CCGACGACGT CGAGCTGAGC
TCGTTGCTGG GCAACGAGCA CAAACAGGCC GGAACGGTGC GCGAACTGAA CGGGCTGCGG
AAAGACGGAT CGTCGTTCCC GATGGACCTT TCCGTCGGCG AAGCCCGGCA GGACGGCGAA
GTGGTCTATG TCGGCGTGAT CCACGATCTC ACCGAGCGCA AACGCACCGA GCAACAATTG
GTGCAGGCGC AGAAGATGGA GATCGTCGGT CAATTGTCCG GCGGCATCGC CCACGATTTC
AACAATCTGC TGACCGTGAT CGTCGGCAAC GCCGAGTTTC TCGGCGAGCA ACTGAAGACC
CGGCCGGATC TGCGCAGCCT GGCCGACGAC ATCGGCCGCG CCGGCGAACG CGGCGCCGAA
CTGACGCAAG GCCTGCTGGC GTTCAGCCGC CGGCAAACGC TGCGGCCGAT CGAAATCGAC
TGCAACGAGC TGCTGGCTTC GATGCACAAG CTGCTGCGGC GCACGATGCG GGAAGACATC
GAAGTGAAAA CGGATTTCGA AGACGGCCTC CGCGCGCTGC TGGCGGATCG CGCGCAGCTG
GAATCCGCCA TCATCAACCT CGCGCTCAAT GCGCAGGACG CGATGGACGG CGGCGGTCGC
CTCAGCATCA GCACCGCCAA CGTCTCGCTG GACGACCAAT ATCAAAGCGC GCATCCCGAG
GTGCGGCCCG GCGAGTATGT GCTGATCGCC ATCACCGACG ATGGCGAAGG CATGCCGAAG
GAGGTGCTCG ACCGGGTGTT CGAACCGTTC TTCACCACCA AGGAAGTCGG CAAAGGCAGC
GGCCTCGGTC TCAGCATGGT CTATGGCTTC GTCAAGCAAT CGAACGGCCA CGTGTCGATC
TACAGCGAGC CCGGCCTCGG CACCACCGTG AGGATCTACC TGCCCGCGCT CGCCTCGAAA
TCCTCGGAAC TGCGCCGCGA CGTCGCGATC GCCCCATTCC ACCCGACCGG CACCGAGGTG
ATCCTGATCG TCGAGGACGA TCCTTTCGTT CGCTCCTACG CGGTGATGTG TCTGCGCAGC
CTCGGCTACA CCGTGCTCTC CGCGGTCGAC GGCAACGAAG CGTTGCAGCT GCTCGGCGGC
GACGCGCGCA TCGACATCCT GTTCACCGAC ATCGTGATGC CGGGCGGCAC CAACGGTTGG
GACCTCGCCG AACGCGCGCA ACAGATGCGT CCGGAAATGC GCGTGCTGCT GACCTCGGGC
TATGCGCTGG AAACCATGGC CGCCCGCGCC CGCATCCGCG ATGGCTCGGT GATTCTAACC
AAGCCGTACC GCAAGGCCGA TCTTGCCCGC CGGCTCCGCC AGATGATCGA CGACACCACG
TCGCTGCATT GA
|
|---|
| Protein sequence | MWFRSIVDSA SDGIIVVDAS ETVRVFNPAC ERLFGYTAPD VVGQKVTLLM PGQDYLWQHR
SVSSGFGRRK DGSIFPMDLS VGQTDFDHSI AFVGIVRDLT ERRRAAQAMR DSERNYRLLV
EGVTDYAIYM LDLDGRITSW NSGAHRIKQY TASEILGKHF SEFYTQEERQ HGVPEHNLKL
AKRVGRCETK GWRRRKDGSQ FWAHVVIEPL RNESGAPIGF AKLTSDITER RRAEQVIREA
DERINTLIET VVDGVLLFDA VGKIQIFNAA CQRLFGYHVE EVVGQNFKML LDRSDDVELS
SLLGNEHKQA GTVRELNGLR KDGSSFPMDL SVGEARQDGE VVYVGVIHDL TERKRTEQQL
VQAQKMEIVG QLSGGIAHDF NNLLTVIVGN AEFLGEQLKT RPDLRSLADD IGRAGERGAE
LTQGLLAFSR RQTLRPIEID CNELLASMHK LLRRTMREDI EVKTDFEDGL RALLADRAQL
ESAIINLALN AQDAMDGGGR LSISTANVSL DDQYQSAHPE VRPGEYVLIA ITDDGEGMPK
EVLDRVFEPF FTTKEVGKGS GLGLSMVYGF VKQSNGHVSI YSEPGLGTTV RIYLPALASK
SSELRRDVAI APFHPTGTEV ILIVEDDPFV RSYAVMCLRS LGYTVLSAVD GNEALQLLGG
DARIDILFTD IVMPGGTNGW DLAERAQQMR PEMRVLLTSG YALETMAARA RIRDGSVILT
KPYRKADLAR RLRQMIDDTT SLH
|
|---|
| |