Gene RPC_2966 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_2966 
Symbol 
ID3969888 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp3246258 
End bp3247022 
Gene Length765 bp 
Protein Length254 aa 
Translation table11 
GC content67% 
IMG OID637926077 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_532830 
Protein GI90424460 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.437274 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.59964 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGCGGG CGTTGACCGG AAAGATCGCG CTCGTCACCG GCGCCAGCCG CGGCATCGGT 
CAGGCGATTG CGAAGCGCTT GGCGGCCGAG GGCGCGACCG TCGCGGTGCA CTACCATTCC
GCGGCGGATG CGGCGAAAGC GACCATCGAC GATATCATGG CCGCGGGCGG CGCGGGCTTT
GCGCTGCAGG CCGATCTGTC GGCGAAGGGC GGCGCTGCTG CGCTCGCCGA ACAATTGTCC
GCACAACTGA TCGAGCGTTA TCGCAGTCCG CAGTTCGACA TTCTGGTCAA CAATGCCGGG
CTCAGCAAAC GCGCGACCAT CGAGGACGTC ACCGAGGAGG ATTTCGATCG GCTATTGCAG
ACCAATCTAA AATCGCCGTT CTTTCTGATC AAGGCGCTGC TGCCGCAGCT GCGTAACGGC
GGTCGCATCG TCAATATTTC CTCGATGGGG ACGCGCGCGG CCTATCCGCT GATGGCGGCC
TATGCGCCGG CGAAGGCGGG CCTCGAGGCG TTGAGCCGGC TGCTCGCGCA GCATCTAGGC
CCCCGGCAGA TCACGGTGAA TTCGGTGCTG CCGGGCGCCA CCGCGACCGA CATGAACGTG
ACGGCGCGCG ATCCGGTGGC GAGCCGTGCG GTCGCCGAAA CCATTGCGCT TGGCCGCGTC
GGTCAGCCCG ACGACATCGC CAAGGTGGTG GCGTTCCTCG CCTCCGACGC CGGCGGCTGG
GTCACCGGCC AGCAGATCGA CGCCAGCGGC GGTCAGCGCT TGTAA
 
Protein sequence
MTRALTGKIA LVTGASRGIG QAIAKRLAAE GATVAVHYHS AADAAKATID DIMAAGGAGF 
ALQADLSAKG GAAALAEQLS AQLIERYRSP QFDILVNNAG LSKRATIEDV TEEDFDRLLQ
TNLKSPFFLI KALLPQLRNG GRIVNISSMG TRAAYPLMAA YAPAKAGLEA LSRLLAQHLG
PRQITVNSVL PGATATDMNV TARDPVASRA VAETIALGRV GQPDDIAKVV AFLASDAGGW
VTGQQIDASG GQRL