Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2966 |
Symbol | |
ID | 3969888 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 3246258 |
End bp | 3247022 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637926077 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_532830 |
Protein GI | 90424460 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.437274 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.59964 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACGCGGG CGTTGACCGG AAAGATCGCG CTCGTCACCG GCGCCAGCCG CGGCATCGGT CAGGCGATTG CGAAGCGCTT GGCGGCCGAG GGCGCGACCG TCGCGGTGCA CTACCATTCC GCGGCGGATG CGGCGAAAGC GACCATCGAC GATATCATGG CCGCGGGCGG CGCGGGCTTT GCGCTGCAGG CCGATCTGTC GGCGAAGGGC GGCGCTGCTG CGCTCGCCGA ACAATTGTCC GCACAACTGA TCGAGCGTTA TCGCAGTCCG CAGTTCGACA TTCTGGTCAA CAATGCCGGG CTCAGCAAAC GCGCGACCAT CGAGGACGTC ACCGAGGAGG ATTTCGATCG GCTATTGCAG ACCAATCTAA AATCGCCGTT CTTTCTGATC AAGGCGCTGC TGCCGCAGCT GCGTAACGGC GGTCGCATCG TCAATATTTC CTCGATGGGG ACGCGCGCGG CCTATCCGCT GATGGCGGCC TATGCGCCGG CGAAGGCGGG CCTCGAGGCG TTGAGCCGGC TGCTCGCGCA GCATCTAGGC CCCCGGCAGA TCACGGTGAA TTCGGTGCTG CCGGGCGCCA CCGCGACCGA CATGAACGTG ACGGCGCGCG ATCCGGTGGC GAGCCGTGCG GTCGCCGAAA CCATTGCGCT TGGCCGCGTC GGTCAGCCCG ACGACATCGC CAAGGTGGTG GCGTTCCTCG CCTCCGACGC CGGCGGCTGG GTCACCGGCC AGCAGATCGA CGCCAGCGGC GGTCAGCGCT TGTAA
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Protein sequence | MTRALTGKIA LVTGASRGIG QAIAKRLAAE GATVAVHYHS AADAAKATID DIMAAGGAGF ALQADLSAKG GAAALAEQLS AQLIERYRSP QFDILVNNAG LSKRATIEDV TEEDFDRLLQ TNLKSPFFLI KALLPQLRNG GRIVNISSMG TRAAYPLMAA YAPAKAGLEA LSRLLAQHLG PRQITVNSVL PGATATDMNV TARDPVASRA VAETIALGRV GQPDDIAKVV AFLASDAGGW VTGQQIDASG GQRL
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