| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2885 |
|---|
| Symbol | |
|---|
| ID | 3970035 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3137071 |
|---|
| End bp | 3139527 |
|---|
| Gene Length | 2457 bp |
|---|
| Protein Length | 818 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637925997 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_532752 |
|---|
| Protein GI | 90424382 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0237924 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0700462 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGACG AGATTTTCCC CGGCGACGGT GAACTCAGCC GGTTGATGCG GAGCCATGAC
TGGTCCGCAA CGCCGCTCGG CCCGCCGGAG ACATGGCCGC AGGGGCTGAA GATCCCGCTG
CGGATGATGC TGACGTCGCG GTTCGAGATG TGGCTCGGCT GGGGACCGGA CTTGGCGTTC
TTCTACAACG ACGCCTATGT GCCGACGCTC GGCAGCAAAC ATCCGGCGGC GCTCGGCCGG
CCGATGCGCG AGGTCTGGCG CGAGGTGTTC GAGGCGGTCA AGGACCGCGT ACGATCGGTG
ATGGTCGACA ACGTCGCGAC CTGGGACAAG GCGCTGCTGT TGCTGCTCGA GCGCAACGGC
TACCCGGAAG AAACCTATCA CACCTTCTCC TACAGCCCGC TGCGCGGCGA CACCGGCGTC
ACCGAAGGGC TGATGTGCGT GGTCAGCGAA GAAACCGAGC GGGTGATCAG CGAGCGCCGG
CTGAATACGC TGCGGGCGCT GGCCGACGGC CTGCTCAACA CCCGCACCGC CGAAGGCGTG
ATCAACGAAA TTCGGGCGGC GGTGCTGCTC GACCGCAAGG ATTTTCCGTT CGGTCTGGTC
TATCTGCGCG ACCACGCCGG AGGCTGGAGC GGACAACCGT GCAGCCTCGA CGCGGGGGCG
CTGCTGACGG TCGACTGGCC GCTGCACGGC TTCGAAGGCG GCGCCAGCGC CAGGCGGGTG
CCGCTGGCTC CGCTGGGATT GGCGCTGCCG TGCGGCGCCT GGGACCGGCC GCCCGGCGAC
GCGCTGGTGC TGCCGATCGC GCATGGCTCC GGCGAGTCGT TCGGGGCCTT GGTGCTCGGT
CTCAATCCGT ATCGGCCGCA CGATCCGGAC ATCGTCGGCT TCGCCCAGCT GTTGGCCGGG
CAGATTTCCG GCGCCCTCGC CAACGTGGAA GCGCTGAAAT CCGAGATCCG CCGCGCCGAC
CGCATCTGGA TCAATTCGCG CGATCTGCTG GTGGTGGTGG ACGCCGACGG CATCTTCCAA
TCGGTCAGCC CGTCCTGGAC GCGAATCCTC GGCTACGCCC CGGACGAGGT GGTCGGCCGC
AGCTTTCGCC ACTTCATCCA TCCCGACGAC CTGGCATTGG CGACCGGCGG ACTGGAGACC
GCCACCCAGG CGATCGATCT GACGGCGTTC GAGATCCGTC AGCTCAGCAA CACCGGCGAG
GTGGTCTGGG TCTCTTGGAA CACCAAGCTG GAAGGCCGAT TCGTCTACGC CTATGGCCGC
GATATCACCG CGGAGAAGAC CCAGGCGGCC GCGCTGCTGG TTGCCGAAGA CCAGCTTCGG
CAATCCCAAA AAATGGAAGC CATCGGCCAG TTGACCGGGG GCATCGCTCA CGATTTCAAC
AATATGCTGG CCGTTGTTAT CGGCTCACTG GAGCTGCTCG ATCGCAAGAT CGGCGACCCC
AGCGCCGCCG TCCGCCGCTA TATCGACGCC GCGATGGACG GCGCCAAGCG ATCCGCAGCC
CTGACCCAGC GGCTGCTGGC GTTCTCCCGG CGACAGCCGT TGAAACCGGA GATCCTCGAT
GCCAACCGGC TGGTCGCCGA GACCTCGGAG ATTTTGCGGC ATTCGATCGG CGGCAATGTG
CGGCTGGAAA CCGTGCTGGC CGGCGGGCTC TGGCGGGTGC ACGCCGACCC CAACCAGCTC
GCCAGCGCGC TGCTCAATCT GGCGGTCAAC GCCCGCGACG CCATGGACGG CGGCGGCCGG
CTGACCATCG AGACCCAAAA CGCGCATCTC GACGACGCCT ATGCGCAGGC GAATTTCGGC
GTCTGCGCAG GTCAGTACGT GATGATCGCG ATGACCGATA CCGGCACCGG CATGGCGCCG
GAGGTGATCG CCCGGGCGTT CGATCCGTTC TTCACCACCA AGGAAGTCGG CAAGGGAACC
GGGCTCGGCC TCAGTCAGGT CTACGGCTTC ATCAAGCAGT CCAGCGGCCA TGTGAAGATC
TATTCCGAGC CGGGCGAGGG CACCACGGTC AAGATCTACC TGCCGCGGAT GTTCAACGCG
ATCGACGAAT TCGTACCGCG CCTCGCCAGC ACCGCGGATC CCGCCGGCAG CTTCGGCGAA
TTGATCCTGG TGGTCGAGGA CGAGCCGGCG ATGCGGCAAT TCAGCATCGA AGCGCTGGGC
ACGCTCGGTT ACCGGGTGTG CGAAGCCGAG GGCGCGGCGA CGGCGCTGGC GCTGCTCGAT
GCCCACCCGG ACATTGCGCT GTTGTTCACC GACATCATCA TGCCGGACGT CAACGGCCGC
CAACTCGCCG ACGAGGCTTG CCGTCGACGG CCTGATTTGA AGGTGCTGTA CACCACCGGC
TACACCCGCA ACGCGGTGGT GCATAATGGC GTGGTCGATC CCGGCGTTCA ATTGATCAGC
AAGCCGTTCA CCATCGATCA ACTCGCGGAA AAGCTCCGCG AGGTGTTGGA CAGGTGA
|
|---|
| Protein sequence | MLDEIFPGDG ELSRLMRSHD WSATPLGPPE TWPQGLKIPL RMMLTSRFEM WLGWGPDLAF
FYNDAYVPTL GSKHPAALGR PMREVWREVF EAVKDRVRSV MVDNVATWDK ALLLLLERNG
YPEETYHTFS YSPLRGDTGV TEGLMCVVSE ETERVISERR LNTLRALADG LLNTRTAEGV
INEIRAAVLL DRKDFPFGLV YLRDHAGGWS GQPCSLDAGA LLTVDWPLHG FEGGASARRV
PLAPLGLALP CGAWDRPPGD ALVLPIAHGS GESFGALVLG LNPYRPHDPD IVGFAQLLAG
QISGALANVE ALKSEIRRAD RIWINSRDLL VVVDADGIFQ SVSPSWTRIL GYAPDEVVGR
SFRHFIHPDD LALATGGLET ATQAIDLTAF EIRQLSNTGE VVWVSWNTKL EGRFVYAYGR
DITAEKTQAA ALLVAEDQLR QSQKMEAIGQ LTGGIAHDFN NMLAVVIGSL ELLDRKIGDP
SAAVRRYIDA AMDGAKRSAA LTQRLLAFSR RQPLKPEILD ANRLVAETSE ILRHSIGGNV
RLETVLAGGL WRVHADPNQL ASALLNLAVN ARDAMDGGGR LTIETQNAHL DDAYAQANFG
VCAGQYVMIA MTDTGTGMAP EVIARAFDPF FTTKEVGKGT GLGLSQVYGF IKQSSGHVKI
YSEPGEGTTV KIYLPRMFNA IDEFVPRLAS TADPAGSFGE LILVVEDEPA MRQFSIEALG
TLGYRVCEAE GAATALALLD AHPDIALLFT DIIMPDVNGR QLADEACRRR PDLKVLYTTG
YTRNAVVHNG VVDPGVQLIS KPFTIDQLAE KLREVLDR
|
|---|
| |