Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2852 |
Symbol | |
ID | 3970080 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 3099604 |
End bp | 3102096 |
Gene Length | 2493 bp |
Protein Length | 830 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637925964 |
Product | penicillin-binding protein 1A |
Protein accession | YP_532719 |
Protein GI | 90424349 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.456684 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGCTGC TGTTTCGGTT TATGGGCTTC CTGTTCGCGG CCGGAACCAT CGTGTTCCTG GTCGGCGTGG CCGCGGCCGC CGGGCTGATC TGGCATTACT CCAAGGACTT GCCGGACTAT TCGCAGCTGC AGGATTATGA GCCGCCGGTG ATGACCAGGG TGCACGCCGC GGACGGCGCG CTGCTCGGCG AATATTCCAA GGAACGACGG CTGTATCTGC CGATACAGGC GGTGCCGAAA ATGGTGATCA ACGCCTTCCT CGCCGCCGAA GACAAGAACT TCTACGAGCA CGGCGGCATC GACTATTCCG GCATGGCGCG CGCGGCGATT CTCTACGCGC AGAATTTCGG CTCCAACCGC AGGCCGCAGG GTGCCTCCAC TATCACCCAG CAGGTCGCCA AGAACTTCCT TTTGACCAAC GAGGTGTCGT TCACCCGCAA GATCAAGGAA GCCTTGCTGG CGATGCGCAT CGAGCGCGCC TATTCCAAGG ACAAGATCCT CGAACTGTAT CTCAACGAAA TCTATCTCGG GCTCGGCGCC TACGGCGTCG CCGCGGCTTC GCTGGTGTAT TTCGACAAGT CGGTCAACGA ACTGACGGTG GCCGAGGCGG CCTATCTGGC GGCGCTGCCG AAGGCGCCGG CGGCGCTGCA TCCGATCCGC AACCGCGACC GCGCCATCGA GCGGCGCAAT TACGTGATCG ATCGGCTGCT GGAGAACGGC TGGATCAAGC AGGCCGATGC CGACAAGGCG CGCAAGGACC CGATGGCGGT GACCAACCGC ACCAACGCCG CGCACATCTT CGCCGGCGAA TATTTCGCCG AGGAGGTCCG CCGCGACGTG TTCGAGCGCT ACGGCGAGAA GAAGCTTTAT GAAGGCGGGC TGTCGGTGCG CACCACGCTC GATCCGAAGC TGCAGGTGAT CGCGCGCAAG ACCATGAGCG CCGGCCTCGT CACCTTCGAC GAGGCGCAGG GCTGGCGCGG CGCCACCGCC AAACTCGACA TCTCGGGCGA CTGGGGCGTC AAGCTCGCCG ACGTCAAGTC GCTGTCGGAT ATTTCGCCGT GGCGGATGGC GGTGGTGCTG GAGACCTCCG ATCAATCGGC GCGCATCGGA TTCCAACCGG GCCGCGAACT CGGCGGCGCG GTGCTGAAGG ATCGCCAGAT CGGCATCATC ACGCTCGACG GGGTGAAATG GGCGAGGGCG GCCTCCGGGC CGCAGCGCGG TCGCACGCCC ACCTCGGTGT CGCAGGTGCT GTCGCCGGGC GACATCATCT ATGCCGACCC GTTGATCGCC AAGGACGGCA GCCTGGTCGA AGGCCAGTTC CGGCTGCGGC AATTGCCCGA AGTGTCCGGC GCCATGGTGG CGATGGACCC GTGGACCGGC CGGGTACTGG CGATGGTCGG CGGCTTCTCG TTCGACCAGA GCCAGTTCAA CCGCGCGACG CAGGCCTATC GGCAGCCCGG CTCGTCGTTC AAGCCGCTGG TCTATTCGGC GGCGATGGAC AACGGCTATA CGCCGTCCAC CGTGGTGGTC GACGCGCCGA TCGAAATCGA CCAGGGCCAG GGCGCCGGGG TGTGGCGTCC GGAGAACTAT TCGACCGGCA AATATTACGG TCCGACCACG CTGCGCAACG CGCTGAAGCA CTCGCTCAAT ACCGTGACGG TGCGGCTGGC GCAGGACGTC GGCATGCCGC TGATCGGCGA ATACGCCAAG CGGTTCGGGG TCTACGACGA ACTGCCGAAC TATCTGTCCT ATGCGCTCGG CGCCGGCGAA ACCACGGTGA TGCGGATGGT GACGGCCTAT TCGATGTTCG CCAATGGCGG GCGCCGGGTG AAGTCGACGC TGATCGACCG CATCCAGGAT CGCTACGGCC GCACCATCTT CAAGCACGAC GCCCGCGAAT GCCGCGGTTG CGACGCGCCC GAGGGATGGA AGAACCAGCC CGAGCCGCAA CTGGTCGATC GCCGCGAACA GGTGCTCGAC GCCATGACCG CCTACCAGAT CACCTCGATG ATGGAAGGCG TGGTGCAGGG CGGCACCGCG ACCATCATGC GCGAAGTCGG CAAGCCGATC GCCGGCAAGA CCGGCACCAC CAACGACGAG AAGGACGCCT GGTTCATCGG CTTCTCACCG GACCTCGTGG TCGGGATCTA TGTCGGCTAC GACAAGCCGC GCAACCTCGG CCGCGGCGGT ACCGGCGGCC ATCTCGCCGC GCCGGTCGCC AAGGAGTTCA TGAAGCTCGC TCTGGCCGAC AAGCCGGCGA TTCCGTTCCG CATTCCGGCC GGAATCAAAT TGATCCGGGT CGACTCCAAG ACCGGCACCC GCGCCGGACC CGGCGACGGC GGCCGCACCA TCCTGGAAGC CTTCAAGCCC GGCACCGCGC CGCCGGACAA TTACTCGGTG ATCGGCGTCG CCGATGCCGA AGGCCGTTCG CTGACCGTAT CGCCCGACGC CGACCGCTCG ATCCTGCGCC CCGGCACCGG CGGGCTCTAC TAG
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Protein sequence | MRLLFRFMGF LFAAGTIVFL VGVAAAAGLI WHYSKDLPDY SQLQDYEPPV MTRVHAADGA LLGEYSKERR LYLPIQAVPK MVINAFLAAE DKNFYEHGGI DYSGMARAAI LYAQNFGSNR RPQGASTITQ QVAKNFLLTN EVSFTRKIKE ALLAMRIERA YSKDKILELY LNEIYLGLGA YGVAAASLVY FDKSVNELTV AEAAYLAALP KAPAALHPIR NRDRAIERRN YVIDRLLENG WIKQADADKA RKDPMAVTNR TNAAHIFAGE YFAEEVRRDV FERYGEKKLY EGGLSVRTTL DPKLQVIARK TMSAGLVTFD EAQGWRGATA KLDISGDWGV KLADVKSLSD ISPWRMAVVL ETSDQSARIG FQPGRELGGA VLKDRQIGII TLDGVKWARA ASGPQRGRTP TSVSQVLSPG DIIYADPLIA KDGSLVEGQF RLRQLPEVSG AMVAMDPWTG RVLAMVGGFS FDQSQFNRAT QAYRQPGSSF KPLVYSAAMD NGYTPSTVVV DAPIEIDQGQ GAGVWRPENY STGKYYGPTT LRNALKHSLN TVTVRLAQDV GMPLIGEYAK RFGVYDELPN YLSYALGAGE TTVMRMVTAY SMFANGGRRV KSTLIDRIQD RYGRTIFKHD ARECRGCDAP EGWKNQPEPQ LVDRREQVLD AMTAYQITSM MEGVVQGGTA TIMREVGKPI AGKTGTTNDE KDAWFIGFSP DLVVGIYVGY DKPRNLGRGG TGGHLAAPVA KEFMKLALAD KPAIPFRIPA GIKLIRVDSK TGTRAGPGDG GRTILEAFKP GTAPPDNYSV IGVADAEGRS LTVSPDADRS ILRPGTGGLY
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