Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2776 |
Symbol | secD |
ID | 3970154 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 3013506 |
End bp | 3015110 |
Gene Length | 1605 bp |
Protein Length | 534 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637925886 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_532643 |
Protein GI | 90424273 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.336703 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.245371 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGTATT TCACGCGGTG GAAGGCGCTG GCGATCATTC TGACCGCGCT GGCGGTCTGC CTATGCGCGG TTCCGAATTT CTTCCCGGAA GCCACCGTCA AGACCTGGCC GAAATGGGCG CAGCGCCATC TGGTGCTGGG GCTCGATCTG CAGGGCGGCT CGCACATCCT GCTCGAGGTC GATTCCAACT CGGTGCGCAA GGACAAGCTC GACCAGGTCC GCGACGACAC CCGCCGCACC CTGCGCGATG CCAAGATCCC CTACACCGGC CTTGCGGTGC GCAACGACGC CGTCGAAGTA CGGATTTCCA AGGACAGCGA CGTTGCGACC GCGCTCAGCA AGCTGCGTGA GCTGTCGCAA CCGCTCGGCG GCCTGATGGG GCAGAGCGGC CAGCGCAACC TTGAGGTCTC CGACGCCGGC TCCGGGTTGA TCCGGCTCGC GGTCACCCAG GCGGCGATCA CCGAGCGGAT CCGGCAGTCG GTCGAACAGT CGATCCAGAT CGTCGAGCGC CGCGTCAATG AACTCGGCAC CGTCGAGCCG TTGATCCAGC GCCAGGGCAT CGACCGTATT CTGGTGCAGG TGCCCGGCCT GCAAGATCCG ACCCGGCTGA AGGAACTGCT CGGCAAGACC GCCAAGCTGG ATTTCCGCAT GGTGGATCCC ACGGTGCCGG CGGATCAGGT GCGGCAGGGC GGCGGCGTGC CGCCGGATTC CGACCTGTTG ATGGGCGCGC AGGCCCCGAA ACAGCCCTAC GTCATCAAAA AGCAGGTGCT GGTGTCGGGC GGCGACCTCA CCGACGCGCA GCCCGGCTTC GACCAGCGCT CCGGCGAGCC GATCGTCTCG TTCCGCTTCA ACACCTCCGG CGCGCGCAAA TTCGCCCAGG CCACCACCGA CAATGTCGGG CAACCGTTCG CGATCGTGCT CGACAACGAG GTGATCTCGG CGCCGGTGAT CCGCGAGCCG ATCACCGGCG GCTCCGGGCA GATTTCCGGC AGCTTCACCG TGCAGCAGGC CAACGACCTC GCCATCCTGC TGCGCGCCGG CGCCTTGCCC GCGCCGCTCA CCATCATCGA GGAGCGCACC GTCGGCCCCG GGCTCGGTCA GGACTCGATC GAGAAGGGCG AACTCGCCGC CTATGTCGGC TCGATCCTCG TCATCGTGTT CATGCTCTTG ACCTACCGGC TGTTCGGCGT GTTCGCCAAC ATCGCAGTCG CCATCAACGT GGCGATGATC TTCGGCGTGC TGTCGCTTTT GAATGCGACG CTGACGCTGC CCGGCATCGC CGGCATCGTG CTGACCGTCG GCATCGCGGT CGACTCCAAC GTGCTGATCT ACGAGCGTAT CCGCGAGGAA ATCCGCGGCG GCCGCACCGC GATCTCGGCG ATCGACGCCG GCTTCAAGCG CGCGCTGTCG ACGATTCTGG ATTCCAACAT CACCACCTTC ATCGCCGCGG CGGTGCTGTT CTACATCGGC ACCGGACCGG TGCGCGGCTT CGCCGTGACG CTCGGCATCG GCATCCTCAC CACGGTGTTC ACCGCCTTCA CGCTGACCCG CCTGATCGTC GCGGCTTGGG TGCGGTGGAA GCGGCCGCAC AGCGTGCCGA TTTGA
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Protein sequence | MLYFTRWKAL AIILTALAVC LCAVPNFFPE ATVKTWPKWA QRHLVLGLDL QGGSHILLEV DSNSVRKDKL DQVRDDTRRT LRDAKIPYTG LAVRNDAVEV RISKDSDVAT ALSKLRELSQ PLGGLMGQSG QRNLEVSDAG SGLIRLAVTQ AAITERIRQS VEQSIQIVER RVNELGTVEP LIQRQGIDRI LVQVPGLQDP TRLKELLGKT AKLDFRMVDP TVPADQVRQG GGVPPDSDLL MGAQAPKQPY VIKKQVLVSG GDLTDAQPGF DQRSGEPIVS FRFNTSGARK FAQATTDNVG QPFAIVLDNE VISAPVIREP ITGGSGQISG SFTVQQANDL AILLRAGALP APLTIIEERT VGPGLGQDSI EKGELAAYVG SILVIVFMLL TYRLFGVFAN IAVAINVAMI FGVLSLLNAT LTLPGIAGIV LTVGIAVDSN VLIYERIREE IRGGRTAISA IDAGFKRALS TILDSNITTF IAAAVLFYIG TGPVRGFAVT LGIGILTTVF TAFTLTRLIV AAWVRWKRPH SVPI
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